PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_B3B78EE36.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CPP
Protein Properties Length: 401aa    MW: 44065.5 Da    PI: 7.7587
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_B3B78EE36.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.23.7e-141453242
                    TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42
                           +kk+CnCk+s+Clk+YCeCfaag +C+  C+C++C Nk e+
  Traes_7AL_B3B78EE36.1 14 RKKQCNCKNSHCLKLYCECFAAGLYCDG-CNCKQCGNKVEN 53
                           689*************************.********9875 PP
2TCR50.73.5e-1696135140
                    TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                            k++kgC+Ckks ClkkYCeCf+a+  Cs++CkC dCkN e
  Traes_7AL_B3B78EE36.1  96 KHNKGCHCKKSGCLKKYCECFQANILCSKNCKCMDCKNFE 135
                            589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.8E-131353IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.4914136IPR005172CRC domain
PfamPF036389.5E-111550IPR005172CRC domain
SMARTSM011146.0E-1996137IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.1E-1299134IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
KPLVEIKSVT PPKRKKQCNC KNSHCLKLYC ECFAAGLYCD GCNCKQCGNK VENEHARQEA  60
INSTKLRNPK AFQPKIENVP SALSVRKDAG APSVPKHNKG CHCKKSGCLK KYCECFQANI  120
LCSKNCKCMD CKNFEGSEEL QAIIQGDNAS DKNNIQQAAN VTLNGAIGSS GYKYSPVRRK  180
RHPEDPLGPE ANHLDASQVA SSSGLEGCIG YQSRSKMVYR SPLANTIHPT DVNDLANHLV  240
IVCRKATETF LTIADNKVEM EVERGIYTNA DLNNDKMKNR EVQNGGVSQP DVATHIDQRT  300
AGDLESPCNN TQEDYRPASP GTQALLCDEQ GTTFGSDYRT SFPSAFHDQD TPELSALQEK  360
TVLTGFRDYL RLLITRGKIN EANASSEPAM ELDAQRNHGA T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-2781454132Protein lin-54 homolog
5fd3_B2e-2781454132Protein lin-54 homolog
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150693.10.0protein tesmin/TSO1-like CXC 5 isoform X1
RefseqXP_020150694.10.0protein tesmin/TSO1-like CXC 5 isoform X2
TrEMBLA0A3B6RI070.0A0A3B6RI07_WHEAT; Uncharacterized protein
TrEMBLA0A3B6RLB10.0A0A3B6RLB1_WHEAT; Uncharacterized protein
TrEMBLA0A446XL150.0A0A446XL15_TRITD; Uncharacterized protein
TrEMBLA0A446XL390.0A0A446XL39_TRITD; Uncharacterized protein
STRINGTraes_7AL_B3B78EE36.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57552653
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-88Tesmin/TSO1-like CXC domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]