PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_AF1593775.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 148aa    MW: 17012.6 Da    PI: 8.4867
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_AF1593775.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.41e-071381655
                           HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           +N+ +++Lr+l+P+a   + kKls  +++ ++ +YI +Lq
  Traes_7AL_AF1593775.1  1 LNQLYSTLRSLIPNA--DHTKKLSIPTTVCQVLDYIPELQ 38
                           69************7..35666***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.90E-5142No hitNo description
SuperFamilySSF474597.07E-9153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS508889.585137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.2E-5138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-7153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
LNQLYSTLRS LIPNADHTKK LSIPTTVCQV LDYIPELQKQ VEDLEKKKQE LTRAKCRERL  60
QRVKDNTGRI VSATPLDGNE IMVQVSLLSN MAASLPLSKC INVFENEGLH LISSSTFSTE  120
VNRTFYSFHF EVHFYMRPSF PVHTVLTW
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA motif 5'-CACGTGG-3' in the promoter of iron (Fe) deficiency-inducible genes as well as of genes involved in iron homeostasis, thus contributing to basal tolerance to iron deficiency, iron uptake from soil and iron transport, particularly during seed maturation and germination. Promotes the accumulation of mugineic acid family phytosiderophores (MAs). Required for ethylene-mediated signaling during iron deficiency responses. Improves growth and yield, especially in calcareous soil with low iron availability. Promotes iron concentration in shoots and grain. {ECO:0000250|UniProtKB:Q0JFZ0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020165798.18e-89transcription factor ORG2-like
SwissprotA2WZ603e-49IRO2_ORYSI; Protein IRON-RELATED TRANSCRIPTION FACTOR 2
TrEMBLM8AKX96e-91M8AKX9_TRIUA; Transcription factor ORG2
STRINGTraes_7AL_AF1593775.11e-107(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32803472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.11e-22bHLH family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]