PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AL_8258AAE78.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | FAR1 | ||||||||
Protein Properties | Length: 540aa MW: 62524.6 Da PI: 8.9045 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 30.5 | 1.2e-09 | 6 | 48 | 48 | 90 |
FAR1 48 tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 ++k++r+r + r gC a+++v ++ +kw++tkl+leH+H ++ Traes_7AL_8258AAE78.2 6 SNKKKRKRLSIREGCPAMMEVVRRGPEKWVITKLVLEHTHVIV 48 468999**********************************875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 6.2E-7 | 6 | 48 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.3E-24 | 133 | 224 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 9.384 | 417 | 449 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.8E-7 | 419 | 447 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0071 | 424 | 451 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 540 aa Download sequence Send to blast |
MLTXSSNKKK RKRLSIREGC PAMMEVVRRG PEKWVITKLV LEHTHVIVSP DKVREVQLLR 60 LSGKEHADQL QEARRNVFGD TGASGLFTYL MRRQSENSGF FYNVQVDGRN CLRNAVWVDA 120 RSKMSYKYFG DAVYFDTTYT QNENMLPFAA FTGMNHHGDC VVFGCALILD KTESSYAWIF 180 ETWLAAMDKR LPFSFTTDEG KTMTEAVAKV FPQCFHRLCR WRVLSKCKKK LSDVYMRFPE 240 LHNELKRCVN ECDTVPVFDM FWGSILDKYG LRENTWLQSL FEARHKWVPA YLTSSFFAEL 300 SLTRRAETIS GFYRNNFSTR APLLSFITTF DQHIDRLYMN EAQKDLALFP PEQLLKTNSI 360 LEKQAASIYT RAAFEFFQTE LIESLHHYAV KVEESPYEAK YYVERDGDPP TRHTVVYNVA 420 EKKAWCDCCR FAFSAILCRH VLGVFILADI DMIPEPCITK RWTKKAKTGP VFVGRILEDE 480 NRHTDSVTSR FSDLVRDAMR CGEKGALSEG SFKFAKEVLR KAYREIDKLT KAGPQQVGNR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376442 | 0.0 | AK376442.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3124E11. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020185207.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | T1M015 | 0.0 | T1M015_TRIUA; Uncharacterized protein | ||||
STRING | Traes_7AL_8258AAE78.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-111 | FAR1-related sequence 5 |
Publications ? help Back to Top | |||
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