PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_669D4AE47.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 701aa    MW: 77645.8 Da    PI: 4.5285
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_669D4AE47.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.22.7e-5291421128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                            lp GfrFhPtdeelv +yLk k++g+  ++ evi+e+d++k+ePwdLp k  +++e+ ew+fF+++d+ky++g+r+nrat++gyWkat
  Traes_7AL_669D4AE47.1   9 LPLGFRFHPTDEELVRHYLKGKITGQIKNEVEVIPEIDVCKCEPWDLPdKaLIRSEDPEWFFFAPKDRKYPNGSRSNRATEAGYWKAT 96 
                            699***********************988889***************96336677888****************************** PP

                    NAM  87 gkdkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            gkd+ ++sk    k++ +g+kktLvf++grapkge+t W+mheyr 
  Traes_7AL_669D4AE47.1  97 GKDRVIKSKgekkKQHMIGMKKTLVFHRGRAPKGERTGWIMHEYRT 142
                            ********976555556***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-583163IPR003441NAC domain
PROSITE profilePS5100556.9929163IPR003441NAC domain
PfamPF023651.2E-2710141IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MTVMELKALP LGFRFHPTDE ELVRHYLKGK ITGQIKNEVE VIPEIDVCKC EPWDLPDKAL  60
IRSEDPEWFF FAPKDRKYPN GSRSNRATEA GYWKATGKDR VIKSKGEKKK QHMIGMKKTL  120
VFHRGRAPKG ERTGWIMHEY RTTEPEFESG EQGGYVLYRL FQKQLEKTER SIPEEMDRSG  180
YSPTPSRSTP DNMEANEEAI TLINKESPES GLHGCPIELP GTIDTPGTPV TRWLADRNGN  240
SGIDEANVLG MPFHGNVDES PKQADMSVGS LAHLIDSQTE NLGSHEFATV SAPMLSHEDL  300
DKLLLQLPHN SVEDFLNETI ADPDEHSSTA YKVQYDADTC FMQAQGELLY DGPNWFGNFL  360
SDDTNPQQSG LYENAALLPY GTNPDVLSMD SGDESLQDLF NSMDDSSGQN DVWSNGFGFN  420
PMHQQLQSTV HPNYIFSQQG IAPRRLRLLD SLSDVNVESR ECMTRDEHEG EESDIVTSKC  480
TSESVESSAD VDDSESTGVT IMTRRRALTR SVPSDCDDAQ STGITIMARR PAPSSNMPSD  540
EADAEATGID IMSRHTAPSS STDSSFNTEQ GTAVRRLRLQ SNLDAGSCSS VDGSSSCIIE  600
HGSENEGLEA EIEEHVDTNF PDDAGNSHAD EQMYMPDHEA NSGMRLRKTA EKSDKESKQE  660
CGLQSHVRAP RKRGGFAARM ILPVLSVALL VLVSVGIYGW A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A3e-47816419169NAC domain-containing protein 19
3swm_B3e-47816419169NAC domain-containing protein 19
3swm_C3e-47816419169NAC domain-containing protein 19
3swm_D3e-47816419169NAC domain-containing protein 19
3swp_A3e-47816419169NAC domain-containing protein 19
3swp_B3e-47816419169NAC domain-containing protein 19
3swp_C3e-47816419169NAC domain-containing protein 19
3swp_D3e-47816419169NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659390.0AK365939.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039C20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020181255.10.0protein NTM1-like 9 isoform X1
TrEMBLA0A3B6RJT60.0A0A3B6RJT6_WHEAT; Uncharacterized protein
TrEMBLA0A446XHV00.0A0A446XHV0_TRITD; Uncharacterized protein
STRINGTraes_7AL_669D4AE47.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51723859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G33060.23e-70NAC 014
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]