PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_665B92F4E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 492aa    MW: 53381.9 Da    PI: 5.6461
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_665B92F4E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.6e-174286147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           r +WT+eE+e++++a k++G   W+ I +++g ++t+ q++s+ qk+
  Traes_7AL_665B92F4E.1 42 REKWTEEEHEKFLEALKLYGRS-WRQIQEHIG-TKTAVQIRSHAQKF 86
                           789*****************55.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.48E-163690IPR009057Homeodomain-like
PROSITE profilePS5129422.0563791IPR017930Myb domain
TIGRFAMsTIGR015578.3E-164089IPR006447Myb domain, plants
SMARTSM007171.6E-144189IPR001005SANT/Myb domain
PfamPF002491.4E-144285IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-104282IPR009057Homeodomain-like
CDDcd001671.51E-114487No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009845Biological Processseed germination
GO:0009909Biological Processregulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MDSSRMPIGK GLSVDVAMEP NEEGMGEHPV KPRKPYTITK QREKWTEEEH EKFLEALKLY  60
GRSWRQIQEH IGTKTAVQIR SHAQKFFSKV VREPGAKIEI EIPPPRPKRK PLHPYPRKRA  120
NSCNGANPAN GQSKLAQISS SSGSDQENGS PVSVLSAMQS DAFGSSMSNP SSRSTSPESS  180
DEENNVPPMV SEEEGQQTGI DQSHKEADQE NIDMGTSEED SSDEVQVTSV KLFGKTVVIP  240
DPRKRCSPDT GSGHENGEQT SQSSNIGTSQ APLAVEIPTH TKGGQISQSS NKATSQAPLA  300
VEVPTYTNGE QISEFSYKAT SQAPLAVEVP TCTNGEQISE FSYKATSQAP LAVEIQAYAA  360
PPSAWVLPYN SFPLHFGESA EARIARLHMW WPYYGFPMVH PSGPSAVAHN GKVTDESEAA  420
KSPPVESSLD FVDNTQATAS KQWKVLESLG TAQAPPSASN FQLKPSTNSA FVRVKPIISS  480
GDEPVXXXXX KM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJF9519260.0JF951926.1 Triticum aestivum clone TaMYB43 MYB-related protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180978.10.0protein LHY-like isoform X1
TrEMBLA0A3B6RQ460.0A0A3B6RQ46_WHEAT; Uncharacterized protein
STRINGTraes_7AL_665B92F4E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77833647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G37260.18e-37MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]