PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AL_628A69311.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 306aa MW: 33753.6 Da PI: 8.4171 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 163 | 1.1e-50 | 11 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk........leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratks 80 lppGfrFhP+d+elv +yL +k+ g + ++ +vd++k+ePwdLp+ + + kewyf+s rdkkyatg+r+nrat+s Traes_7AL_628A69311.1 11 LPPGFRFHPRDDELVLDYLSRKLGGGGaggaaaavASXXXAMVDVDLNKIEPWDLPEIACIGGKEWYFYSLRDKKYATGQRTNRATES 98 79**********************99988887765444457***************7666789************************* PP NAM 81 gyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gyWkatgkd+++ + kg lvg++ktLvfy+grapkg+kt+Wvmhe+r Traes_7AL_628A69311.1 99 GYWKATGKDRAISR-KGLLVGMRKTLVFYEGRAPKGKKTEWVMHEFRK 145 ************99.999****************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.7E-58 | 2 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 54.435 | 11 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-25 | 12 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 306 aa Download sequence Send to blast |
MSSLSMVEAR LPPGFRFHPR DDELVLDYLS RKLGGGGAGG AAAAVASXXX AMVDVDLNKI 60 EPWDLPEIAC IGGKEWYFYS LRDKKYATGQ RTNRATESGY WKATGKDRAI SRKGLLVGMR 120 KTLVFYEGRA PKGKKTEWVM HEFRKEGQGD LMKLPLKEDW VLCRVFYKTR TTIAKPSTGS 180 NYNIDSAAAT SLPPLIDNYI AFDHPGMSTV QNLEGYEQVP CFSNGPSSHP SSSASMNIPV 240 MAMAPMAADQ EQQHMGKAIK DALSQLTRFE QGNVKREAPA QGGVFAQDGF EYLAESGFSQ 300 MWNSLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-47 | 6 | 168 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-47 | 6 | 168 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-47 | 6 | 168 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-47 | 6 | 168 | 12 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-47 | 6 | 168 | 15 | 168 | NAC domain-containing protein 19 |
3swm_B | 1e-47 | 6 | 168 | 15 | 168 | NAC domain-containing protein 19 |
3swm_C | 1e-47 | 6 | 168 | 15 | 168 | NAC domain-containing protein 19 |
3swm_D | 1e-47 | 6 | 168 | 15 | 168 | NAC domain-containing protein 19 |
3swp_A | 1e-47 | 6 | 168 | 15 | 168 | NAC domain-containing protein 19 |
3swp_B | 1e-47 | 6 | 168 | 15 | 168 | NAC domain-containing protein 19 |
3swp_C | 1e-47 | 6 | 168 | 15 | 168 | NAC domain-containing protein 19 |
3swp_D | 1e-47 | 6 | 168 | 15 | 168 | NAC domain-containing protein 19 |
4dul_A | 1e-47 | 6 | 168 | 12 | 165 | NAC domain-containing protein 19 |
4dul_B | 1e-47 | 6 | 168 | 12 | 165 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM027572 | 0.0 | HM027572.1 Triticum aestivum NAC transcription factor 7 (NAC7) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020188633.1 | 0.0 | NAC domain-containing protein 21/22-like | ||||
Swissprot | Q84TE6 | 2e-88 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A3B6RMA1 | 0.0 | A0A3B6RMA1_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7AL_628A69311.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1012 | 37 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56010.2 | 1e-88 | NAC domain containing protein 1 |