PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AL_6279FCE8B.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 208aa MW: 22609.9 Da PI: 10.876 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 24.9 | 4.6e-08 | 1 | 21 | 36 | 56 |
G2-like 36 mkvkgLtlehvkSHLQkYRla 56 m++++Lt+++++SHLQkYR++ Traes_7AL_6279FCE8B.1 1 MGINSLTRHNIASHLQKYRSH 21 899****************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.9E-7 | 1 | 24 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 208 aa Download sequence Send to blast |
MGINSLTRHN IASHLQKYRS HRKHMIAREA EAASWTQRRQ MYAAGGPAAA VKRQDSNIWT 60 VPTIGFAPAH PPPPPPPSPA AMQHYVRPLH VWGHPTMDSP RMPMWPRHPM PRAPXXXVGS 120 PAAAAVRPGF LAPPLHEGAS SVYADPWDSL HGNADGTEIS CSSCARCHAV SSLHAPLHAI 180 SAGEQEPARI AAPATSTTIK REHRRGHR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes chloroplast development. Acts as an activator of nuclear photosynthetic genes involved in chlorophyll biosynthesis, light harvesting, and electron transport. {ECO:0000269|PubMed:19808806}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. {ECO:0000269|PubMed:11340194}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF105406 | 0.0 | EF105406.1 Triticum aestivum golden 2-like protein (Glk1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020191527.1 | 4e-59 | probable transcription factor GLK1 | ||||
Swissprot | Q5Z5I4 | 6e-45 | GLK1_ORYSJ; Probable transcription factor GLK1 | ||||
TrEMBL | A0A453SAF5 | 5e-75 | A0A453SAF5_AEGTS; Uncharacterized protein | ||||
STRING | Traes_7AL_6279FCE8B.1 | 1e-145 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2415 | 38 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20570.1 | 4e-24 | GBF's pro-rich region-interacting factor 1 |
Publications ? help Back to Top | |||
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