PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_4E68C2154.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 330aa    MW: 35497.3 Da    PI: 7.0473
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_4E68C2154.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.36.3e-274094155
                G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                           kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+    Qk+Rl
  Traes_7AL_4E68C2154.1 40 KPRLRWTVELHDRFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLFYCSQKFRL 94
                           79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-243795IPR009057Homeodomain-like
SuperFamilySSF466892.51E-113995IPR009057Homeodomain-like
TIGRFAMsTIGR015574.6E-174095IPR006447Myb domain, plants
PfamPF143791.2E-24134180IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MFPAAAAASS KKPDVSPSSV HDRAAAAACD SGLVLTTDPK PRLRWTVELH DRFVDAVAQL  60
GGPDKATPKT IMRVMGVKGL TLYHLFYCSQ KFRLGKQHKE FGDHSVKDAM EMQRNAASSS  120
SGMMGRSMND RSTHMNESLR MQMEVQRRLH EQLEVQKHLQ MRVEAQGKYM QSILEKAYQT  180
LASSDCATWP AAAGYRSLGG SQAPALDLGG SMSFQDLTLY GGSSSHLDLQ QHMEMRPTMA  240
MDSFLAFNES CIGSATVRSC STGKSPMMWG NGDDEQAKSG GSADELLQMA PSCMMEAGGG  300
SGGSMDPIMS LSGDSLGSKG FDGPIISSKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A4e-144096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B4e-144096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C4e-144096157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D4e-144096157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3651420.0AK365142.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2031F05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020179587.10.0myb family transcription factor APL-like
SwissprotQ9SAK51e-81APL_ARATH; Myb family transcription factor APL
TrEMBLA0A3B6RQZ00.0A0A3B6RQZ0_WHEAT; Uncharacterized protein
TrEMBLA0A446XVX30.0A0A446XVX3_TRITD; Uncharacterized protein
STRINGTraes_7AL_4E68C2154.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25043890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.25e-74G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  5. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]