PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AL_38B48B7B2.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | NAC | ||||||||
Protein Properties | Length: 362aa MW: 40600.6 Da PI: 8.0894 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.1 | 1.2e-51 | 33 | 160 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lppGfrFhPtdee++++y +kv ++ + + +i++v+++k+ePw+Lp+k+k +ekewyf++++d+ky+tg r+n+a ++gyWkatgk Traes_7AL_38B48B7B2.2 33 LPPGFRFHPTDEEIIKFYVVPKVLDEAFVA-AAIEDVNLNKYEPWELPEKAKMGEKEWYFYCRKDRKYPTGIRTNQAKNAGYWKATGK 119 79*************************998.78***************99999*********************************** PP NAM 89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 dke+++ +l+g+kktLvfykgrap+gekt+W+mheyrle Traes_7AL_38B48B7B2.2 120 DKEIFHPPLTLIGMKKTLVFYKGRAPRGEKTNWIMHEYRLE 160 ***************************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-59 | 20 | 195 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 55.858 | 33 | 195 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.5E-26 | 34 | 159 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 362 aa Download sequence Send to blast |
MIASNIAITL ESIAEKASTM TDHLQVQQQK LELPPGFRFH PTDEEIIKFY VVPKVLDEAF 60 VAAAIEDVNL NKYEPWELPE KAKMGEKEWY FYCRKDRKYP TGIRTNQAKN AGYWKATGKD 120 KEIFHPPLTL IGMKKTLVFY KGRAPRGEKT NWIMHEYRLE SNKQLTSNPS TATRTVTITN 180 ASSKEQWVVC RIFHKSAGLK KVVMPSYVMP MSIGAEHQQG FADLDTLPPL MGYEMSSSLA 240 NPMLLPTTSP YQLRDIGAGS SIMGSMALPI MNDHYIGNHH QQMMSDPTPP LSFYQQHQQM 300 MMYVGADRGF MVGAEPGCGP SSMVSQEHAV TGLSNNYQGN AAATAVGKTS SMNMGMDDMW 360 KY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-48 | 23 | 201 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-48 | 23 | 201 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-48 | 23 | 201 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-48 | 23 | 201 | 3 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 1e-48 | 23 | 201 | 3 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-48 | 23 | 201 | 3 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR819761 | 3e-43 | FR819761.1 Hordeum vulgare subsp. vulgare mRNA for NAC transcription factor (NAC009 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020190152.1 | 0.0 | NAC domain-containing protein 79-like | ||||
Refseq | XP_020197199.1 | 0.0 | NAC domain-containing protein 79-like | ||||
Swissprot | Q9FLJ2 | 6e-77 | NC100_ARATH; NAC domain-containing protein 100 | ||||
TrEMBL | A0A3B6RPW9 | 0.0 | A0A3B6RPW9_WHEAT; Uncharacterized protein | ||||
STRING | Traes_7AL_38B48B7B2.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1452 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G61430.1 | 3e-79 | NAC domain containing protein 100 |
Publications ? help Back to Top | |||
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