PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_2D85286A1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family TALE
Protein Properties Length: 153aa    MW: 17731.6 Da    PI: 7.7809
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_2D85286A1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.93.5e-08901232154
                            HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
               Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                            k +yp++e++++L +++gL+ +q+ +WF N+R +
  Traes_7AL_2D85286A1.1  90 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 123
                            569*****************************87 PP
2ELK30.77e-114465122
                    ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                           ELKh+L+++Y+++L+++++E++
  Traes_7AL_2D85286A1.1 44 ELKHELKQGYREKLVDIREEIL 65
                           9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011880.00144465IPR005539ELK domain
PfamPF037891.1E-64465IPR005539ELK domain
PROSITE profilePS5121310.1964464IPR005539ELK domain
PROSITE profilePS5007111.59664127IPR001356Homeobox domain
SMARTSM003894.9E-1066131IPR001356Homeobox domain
SuperFamilySSF466892.35E-1666131IPR009057Homeodomain-like
CDDcd000861.04E-1067128No hitNo description
Gene3DG3DSA:1.10.10.606.8E-2571128IPR009057Homeodomain-like
PfamPF059201.1E-1884123IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MSDDEDNPVD SESNMFDGND VSDGMGFGML TEGERSLVER VRQELKHELK QGYREKLVDI  60
REEILRKRRA GKLPGDTAST LKAWWQAHAK WPYPTEEDKA RLVQETGLQL KQINNWFINQ  120
RKRNWHSNPT SSSSDKSKRK RNNAGEGNAE QSW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1120140RKRNWHSNPTSSSSDKSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3539450.0AK353945.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1003P14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020196996.11e-109homeobox protein knotted-1-like 11 isoform X1
SwissprotQ94LW44e-93KNOSB_ORYSJ; Homeobox protein knotted-1-like 11
TrEMBLA0A446YWV21e-109A0A446YWV2_TRITD; Uncharacterized protein
STRINGTraes_7AL_07431A665.21e-109(Triticum aestivum)
STRINGTraes_7AL_2D85286A1.11e-110(Triticum aestivum)
STRINGTraes_7DL_77A6A7FBF.21e-109(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56438169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.22e-74KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]