PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AL_2433E45D7.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | AP2 | ||||||||
Protein Properties | Length: 63aa MW: 7168.41 Da PI: 10.4626 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.5 | 1.3e-07 | 25 | 62 | 1 | 43 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAa 43 s+++ V+ +k g+W+A+I +k ++lg ++t e+ a Traes_7AL_2433E45D7.1 25 SRFRSVTLHK-CGKWEARIGQlM----GKKFVYLGLYDT-EMDA 62 789*******.7******77733....25**********.8765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.22E-7 | 25 | 63 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 0.0047 | 26 | 63 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 8.847 | 26 | 63 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-5 | 26 | 63 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence Send to blast |
MSMLSKEELV QVLRRQGAGF VRGSSRFRSV TLHKCGKWEA RIGQLMGKKF VYLGLYDTEM 60 DAA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development. {ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357393 | 6e-87 | AK357393.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1052F01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020151062.1 | 7e-33 | ethylene-responsive transcription factor RAP2-7-like | ||||
Swissprot | A0A0N7KMH0 | 3e-33 | AP24_ORYSJ; APETALA2-like protein 4 | ||||
TrEMBL | A0A446XYC7 | 1e-36 | A0A446XYC7_TRITD; Uncharacterized protein | ||||
TrEMBL | M0W3M6 | 5e-37 | M0W3M6_HORVV; Uncharacterized protein | ||||
TrEMBL | M8A4F9 | 1e-36 | M8A4F9_TRIUA; Floral homeotic protein APETALA 2 | ||||
STRING | Traes_7AL_2433E45D7.1 | 5e-39 | (Triticum aestivum) | ||||
STRING | TRIUR3_10274-P1 | 2e-37 | (Triticum urartu) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5514 | 36 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 5e-30 | AP2 family protein |
Publications ? help Back to Top | |||
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