PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_7AL_1C76E543C.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 168aa MW: 19865.7 Da PI: 9.8893 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 90.7 | 7.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien +nrqvt+skRr gi+KKA EL vLCda+va+i+fsstgk +e++s Traes_7AL_1C76E543C.1 9 KRIENATNRQVTYSKRRSGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 89.3 | 7.2e-30 | 71 | 164 | 1 | 94 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 yq++ g+sl+ +++e++q+ l+ Lk+ ++nL++e+R+++GedL+ L+++eL+ Leq+++ +lk++R++K++++++q+e+ +kk + Traes_7AL_1C76E543C.1 71 YQQAIGTSLWIEQYENMQRTLNHLKDINRNLRTEIRQRMGEDLDALEFEELRDLEQNVDAALKEVRQRKYHVITTQTETYKKKVRPFL 158 67888999*****************************************************************************999 PP K-box 89 eenkaL 94 +++ +L Traes_7AL_1C76E543C.1 159 NNHYNL 164 999887 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 9.3E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 32.24 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.29E-37 | 2 | 95 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.26E-41 | 2 | 80 | No hit | No description |
PRINTS | PR00404 | 8.9E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.9E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.9E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.3E-21 | 82 | 164 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.777 | 84 | 168 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 168 aa Download sequence Send to blast |
MGRGKIEIKR IENATNRQVT YSKRRSGIMK KARELTVLCD AQVAIIMFSS TGKYHEFCST 60 GTDIKGIFDR YQQAIGTSLW IEQYENMQRT LNHLKDINRN LRTEIRQRMG EDLDALEFEE 120 LRDLEQNVDA ALKEVRQRKY HVITTQTETY KKKVRPFLNN HYNLFSIN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-18 | 1 | 63 | 1 | 63 | MEF2C |
5f28_B | 3e-18 | 1 | 63 | 1 | 63 | MEF2C |
5f28_C | 3e-18 | 1 | 63 | 1 | 63 | MEF2C |
5f28_D | 3e-18 | 1 | 63 | 1 | 63 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor involved in the development of floral organs. Required for normal development of lodicules and stamens (whorls 2 and 3). May function as a heterodimer with MADS4. {ECO:0000269|PubMed:12506001, ECO:0000269|PubMed:12905025, ECO:0000269|PubMed:14558657}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AM502879 | 0.0 | AM502879.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM13 (WM13 gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020159050.1 | 1e-110 | MADS-box transcription factor 16 | ||||
Swissprot | Q944S9 | 1e-105 | MAD16_ORYSJ; MADS-box transcription factor 16 | ||||
TrEMBL | A0A446XPF1 | 1e-122 | A0A446XPF1_TRITD; Uncharacterized protein | ||||
STRING | Traes_7AL_1C76E543C.1 | 1e-122 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5728 | 35 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54340.1 | 5e-56 | MIKC_MADS family protein |