PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_7AL_1415D04BF.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 729aa MW: 80834.1 Da PI: 7.1787 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 55.7 | 8.8e-18 | 6 | 69 | 34 | 99 |
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 ++l +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F ++++ +l+++++r+ Traes_7AL_1415D04BF.1 6 QELFAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDNNQLLLGIRRA 69 47899*********************************************..7777778**99997 PP | |||||||
2 | Auxin_resp | 116.7 | 2e-38 | 94 | 177 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld vrWpnS+Wrs+k Traes_7AL_1415D04BF.1 94 AAHAASTNSRFTIFYNPRASPCEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDDVRWPNSHWRSVK 177 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 0.0031 | 1 | 70 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.675 | 1 | 70 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.09E-24 | 2 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-25 | 2 | 83 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.04E-13 | 6 | 68 | No hit | No description |
Pfam | PF02362 | 1.3E-15 | 6 | 69 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-33 | 94 | 177 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 9.16E-8 | 598 | 679 | No hit | No description |
Pfam | PF02309 | 2.9E-8 | 600 | 689 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.381 | 603 | 687 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 729 aa Download sequence Send to blast |
MQPPAQELFA KDLHGNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNDNN 60 QLLLGIRRAT RPQTVMPSSV LSSDSMHIGL LAAAAHAAST NSRFTIFYNP RASPCEFVIP 120 LAKYVKAVYH TRISVGMRFR MLFETEESSV RRYMGTITGI SDLDDVRWPN SHWRSVKVGW 180 DESTAGERQP RVSLWEIEPL TTFPMYPTPF PLRLKRPWPT GLPSLHGGKD DDLTSSLMWL 240 RDSANPGFQS LNFGGAGMNP WMQPRLDASL LGLQPDIYQT MAAAAFQDPT KMSPTMLQFQ 300 QPQNMVGRAT PLLQSQILQQ MQPQFQQQSY LQNMNGTTIQ GQAQSEFLQQ QLQRCQSFNE 360 QKPQLLQQQE SNQQQSQGMQ VPQHQHMQQQ KNMANYQSAY SQLSPGPQSS PTALQTALPF 420 SQSQSFSDTN MSSLSPSGAP AMHNTLGPFS SETASHLSMS RPTAVPVPDS WSSKRVAVES 480 LIPSRPQSTT HMEQLSSTPP SIPQSSALAP LPGRGCLVDQ DGSSDPQNHL LFGVNIDSHS 540 LLMQGGLHDE NDSTAIPYST SNFLSPSQHD FSLDQTLNSS GCLDESGYVP CSHTPDQVNQ 600 PPATFVKVYK SGTYGRSLDI TKFSNYHELR RELGRLFGLE GQLEDPMRSG WQLVFVDREE 660 DVLLVGDDPW QEFVNSVSCI KILSPQEVQQ MGKQGLELLS SAPGKRLGGA VVVAVAAATT 720 MRAGRSRGA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-83 | 2 | 198 | 192 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020157111.1 | 0.0 | auxin response factor 17 | ||||
Swissprot | Q653U3 | 0.0 | ARFQ_ORYSJ; Auxin response factor 17 | ||||
TrEMBL | A0A3B6RQB9 | 0.0 | A0A3B6RQB9_WHEAT; Auxin response factor | ||||
TrEMBL | A0A446XUN2 | 0.0 | A0A446XUN2_TRITD; Auxin response factor | ||||
STRING | Traes_7AL_1415D04BF.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2012 | 36 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 1e-170 | auxin response factor 6 |
Publications ? help Back to Top | |||
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