PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_7AL_1415D04BF.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 729aa    MW: 80834.1 Da    PI: 7.1787
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_7AL_1415D04BF.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.78.8e-186693499
                           SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                           ++l  +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +l+++++r+
  Traes_7AL_1415D04BF.1  6 QELFAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNDNNQLLLGIRRA 69
                           47899*********************************************..7777778**99997 PP
2Auxin_resp116.72e-3894177183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaast+s F+++YnPras+ eFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdld vrWpnS+Wrs+k
  Traes_7AL_1415D04BF.1  94 AAHAASTNSRFTIFYNPRASPCEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDDVRWPNSHWRSVK 177
                            79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0031170IPR003340B3 DNA binding domain
PROSITE profilePS5086312.675170IPR003340B3 DNA binding domain
SuperFamilySSF1019362.09E-24297IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-25283IPR015300DNA-binding pseudobarrel domain
CDDcd100177.04E-13668No hitNo description
PfamPF023621.3E-15669IPR003340B3 DNA binding domain
PfamPF065071.6E-3394177IPR010525Auxin response factor
SuperFamilySSF542779.16E-8598679No hitNo description
PfamPF023092.9E-8600689IPR033389AUX/IAA domain
PROSITE profilePS5174522.381603687IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MQPPAQELFA KDLHGNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNDNN  60
QLLLGIRRAT RPQTVMPSSV LSSDSMHIGL LAAAAHAAST NSRFTIFYNP RASPCEFVIP  120
LAKYVKAVYH TRISVGMRFR MLFETEESSV RRYMGTITGI SDLDDVRWPN SHWRSVKVGW  180
DESTAGERQP RVSLWEIEPL TTFPMYPTPF PLRLKRPWPT GLPSLHGGKD DDLTSSLMWL  240
RDSANPGFQS LNFGGAGMNP WMQPRLDASL LGLQPDIYQT MAAAAFQDPT KMSPTMLQFQ  300
QPQNMVGRAT PLLQSQILQQ MQPQFQQQSY LQNMNGTTIQ GQAQSEFLQQ QLQRCQSFNE  360
QKPQLLQQQE SNQQQSQGMQ VPQHQHMQQQ KNMANYQSAY SQLSPGPQSS PTALQTALPF  420
SQSQSFSDTN MSSLSPSGAP AMHNTLGPFS SETASHLSMS RPTAVPVPDS WSSKRVAVES  480
LIPSRPQSTT HMEQLSSTPP SIPQSSALAP LPGRGCLVDQ DGSSDPQNHL LFGVNIDSHS  540
LLMQGGLHDE NDSTAIPYST SNFLSPSQHD FSLDQTLNSS GCLDESGYVP CSHTPDQVNQ  600
PPATFVKVYK SGTYGRSLDI TKFSNYHELR RELGRLFGLE GQLEDPMRSG WQLVFVDREE  660
DVLLVGDDPW QEFVNSVSCI KILSPQEVQQ MGKQGLELLS SAPGKRLGGA VVVAVAAATT  720
MRAGRSRGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-832198192388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020157111.10.0auxin response factor 17
SwissprotQ653U30.0ARFQ_ORYSJ; Auxin response factor 17
TrEMBLA0A3B6RQB90.0A0A3B6RQB9_WHEAT; Auxin response factor
TrEMBLA0A446XUN20.0A0A446XUN2_TRITD; Auxin response factor
STRINGTraes_7AL_1415D04BF.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.21e-170auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]