PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_7AL_0D52C1D87.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 289aa MW: 31890.4 Da PI: 4.4417 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47 | 6.3e-15 | 87 | 140 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++k +g+W A+I e + k ++lg+f t+ eAa+a++ a+ +l+g Traes_7AL_0D52C1D87.1 87 SSYRGVTRRK-DGKWQARIGRIGEsR--DtKDIYLGTFETEVEAAEAYDLAAIQLRG 140 67*****999.9******99953323..36**********99************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 10.165 | 1 | 52 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.0016 | 11 | 58 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-7 | 16 | 52 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-6 | 16 | 52 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 6.19E-23 | 87 | 150 | No hit | No description |
Pfam | PF00847 | 1.3E-10 | 87 | 140 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.03E-17 | 87 | 150 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 18.36 | 88 | 148 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.2E-19 | 88 | 148 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-27 | 88 | 154 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-8 | 89 | 100 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.8E-8 | 130 | 150 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 289 aa Download sequence Send to blast |
MFCMGSVSTF GCHCASSVYL GSYVTEENAA RAHDLAALKY WGITQPTKLN FNISDYAKEI 60 EIMKSMNQDE FVAYIRRQSS CFSRGTSSYR GVTRRKDGKW QARIGRIGES RDTKDIYLGT 120 FETEVEAAEA YDLAAIQLRG VHAVTNFDIS NYSEEGLKKL EGSSEVVNLE DQSEVTKLAV 180 TNLDISQHCE DGLKKLDGAS QIVNLEDQSE VTKLSVTNFD ISNCCEDGLK KLDGASQIVN 240 LEDQSEVTKL SVTNFDISNC CEDGLKKLEG SSEVANLEDQ SEVTKLAGQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | DQ286570 | 0.0 | DQ286570.1 Triticum aestivum aintegumenta-like protein (ANTL1B) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150541.1 | 1e-166 | AP2-like ethylene-responsive transcription factor AIL1 | ||||
Swissprot | Q1PFE1 | 1e-51 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A446XGR1 | 0.0 | A0A446XGR1_TRITD; Uncharacterized protein | ||||
STRING | Traes_7AL_0D52C1D87.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7864 | 35 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G72570.1 | 5e-54 | AP2 family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|