PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_7AL_07B7BEEC31.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 83aa MW: 8842.99 Da PI: 10.6086 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.3 | 7.1e-08 | 26 | 69 | 2 | 43 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 g W++ Ed l++a k+++++ +W+++a+ ++ g+t c r Traes_7AL_07B7BEEC31.1 26 GGWSAGEDRSLLNALKEFPKDtamRWEKVAAAVP-GKTKAGCMKR 69 56********************************.***9988776 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.6E-4 | 24 | 76 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.17E-10 | 24 | 74 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.9E-7 | 26 | 69 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-7 | 26 | 74 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.864 | 26 | 74 | IPR017877 | Myb-like domain |
CDD | cd00167 | 8.04E-6 | 28 | 74 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 83 aa Download sequence Send to blast |
RKRKPLDPRA GAADADTGGN AGGGDGGWSA GEDRSLLNAL KEFPKDTAMR WEKVAAAVPG 60 KTKAGCMKRV TELKRDFRSS KEP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JF951938 | 1e-124 | JF951938.1 Aegilops speltoides clone TaMYB55 MYB-related protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020170202.1 | 3e-51 | uncharacterized protein F54F2.9 | ||||
Refseq | XP_020170203.1 | 3e-51 | uncharacterized protein F54F2.9 | ||||
Swissprot | Q9ASQ2 | 1e-26 | MAMYB_ARATH; Transcription factor MAMYB | ||||
TrEMBL | A0A3B6TSE4 | 6e-50 | A0A3B6TSE4_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453RX10 | 6e-50 | A0A453RX10_AEGTS; Uncharacterized protein | ||||
TrEMBL | M7YN59 | 6e-51 | M7YN59_TRIUA; DnaJ homolog subfamily C member 2 | ||||
TrEMBL | M8BRX4 | 5e-50 | M8BRX4_AEGTA; DnaJ homolog subfamily C member 2 | ||||
STRING | Traes_7DL_FD9C65DC01.1 | 1e-52 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10311 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G45420.1 | 3e-22 | MYB_related family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|