PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_F95C12EBB.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 927aa    MW: 102497 Da    PI: 5.8736
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_F95C12EBB.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.46.8e-24136237199
                            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                            f+k+lt sd++++g +++p++ ae+        ++++++  +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+
  Traes_6DS_F95C12EBB.1 136 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVL 221
                            99*****************************86555544..8********************************************** PP

                            EEE-SSSEE..EEEEE-S CS
                     B3  82 Fkldgrsefelvvkvfrk 99 
                            F   ++++ +l+++++r+
  Traes_6DS_F95C12EBB.1 222 FI--WNDNNQLLLGIRRA 237
                            **..7777778**99997 PP

2Auxin_resp120.61.2e-39262345183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                            aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k
  Traes_6DS_F95C12EBB.1 262 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 345
                            79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.15E-48121265IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-42128251IPR015300DNA-binding pseudobarrel domain
CDDcd100171.20E-20135236No hitNo description
PROSITE profilePS5086312.971136238IPR003340B3 DNA binding domain
PfamPF023623.2E-22136237IPR003340B3 DNA binding domain
SMARTSM010191.2E-24136238IPR003340B3 DNA binding domain
PfamPF065071.5E-34262345IPR010525Auxin response factor
SuperFamilySSF542773.27E-8785871No hitNo description
PfamPF023095.2E-8787881IPR033389AUX/IAA domain
PROSITE profilePS5174522.582795879IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 927 aa     Download sequence    Send to blast
MNLSPSAAAG GGLPDQPASP EVSEEHKCLN SELWHACAGP LVSLPAVGSR VLYFPQGHSE  60
QVSASTNKEM ESQIPNYPNL PAQLICQLHN VTMHADAETD EVYAQMTLQP LSPQELKDPF  120
LPAELGNASK QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFTQQ PPAQELMAKD  180
LHGNEWKFRH IFRGQPKRHL LTTGWSVFIS AKRLVAGDSV LFIWNDNNQL LLGIRRANRS  240
QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR  300
ISVGMRFRML FETEESSVRR YMGTITGISD LDPARWPNSH WRSVKVGWDE STAGERQPRV  360
SLWEIEPLTT YPMYSSPFPM RLKRPWPTGL PSLYGGKEDD LTSSLMWLRD GANPGFQSFN  420
FGGLGMSPWM QPRMDSSLLG LQPDMYQAMS AAAFQNTTKQ VSPTLLQFQQ PQNIAGRSAL  480
LSSQILQQVQ PQFQEMHHQN INDSAIQGHN QSEYLQQQLQ RCQSFNGQKS PPPQQQESHH  540
QHQQQQSQCM QTPQHQQMQE QKHSPDFQCV PNGLLVFSQL SSTNQSPPST LQTVSAFSQQ  600
QNLQDRNISS LAPSNVPSMH DTLRPFPSEA GSNLQGVPRT TPVPVSDPWS SKRVAMESVI  660
PSSSHVNSSH MQQLDSEPSN IPQSSSLAPL PGRECLVDQD GNSDNQNHLL FGVNIDSQSL  720
LMQGGIPSLQ EDNGCIASLQ DDNDSSTIPY STCNFLSPSQ NDFPLNEALA SSGCLDESGY  780
ASFSENSDHV NQPTAAFVKV YKSGAFGRLL DITKFSNYHE LRSEVGRLFG LEGQLEDPAR  840
SGWQLVFVDR EDDILLVGDD PWQEFVNSVS CIKILTPQEV QQMGKQGIDL LSSAPARRLG  900
NSCDNYAGRQ ESRSLSTVIA SVGSVEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1622937151393Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020199461.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A3B6QC060.0A0A3B6QC06_WHEAT; Auxin response factor
TrEMBLA0A453NFY90.0A0A453NFY9_AEGTS; Auxin response factor
STRINGTraes_6DS_F95C12EBB.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20123685
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]