PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DS_F95C12EBB.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 927aa MW: 102497 Da PI: 5.8736 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.4 | 6.8e-24 | 136 | 237 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+lt sd++++g +++p++ ae+ ++++++ +l+ +d++g++W++++i+r++++r++lt+GW+ F +a++L +gD+v+ Traes_6DS_F95C12EBB.1 136 FCKTLTASDTSTHGGFSVPRRAAEKVfppldftQQPPAQ--ELMAKDLHGNEWKFRHIFRGQPKRHLLTTGWSVFISAKRLVAGDSVL 221 99*****************************86555544..8********************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F ++++ +l+++++r+ Traes_6DS_F95C12EBB.1 222 FI--WNDNNQLLLGIRRA 237 **..7777778**99997 PP | |||||||
2 | Auxin_resp | 120.6 | 1.2e-39 | 262 | 345 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaast+s F+++YnPras+seFv++++k++ka++ +++svGmRf+m fete+ss rr++Gt++g+sdldp rWpnS+Wrs+k Traes_6DS_F95C12EBB.1 262 AAHAASTNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRISVGMRFRMLFETEESSVRRYMGTITGISDLDPARWPNSHWRSVK 345 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.15E-48 | 121 | 265 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.2E-42 | 128 | 251 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.20E-20 | 135 | 236 | No hit | No description |
PROSITE profile | PS50863 | 12.971 | 136 | 238 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.2E-22 | 136 | 237 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.2E-24 | 136 | 238 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.5E-34 | 262 | 345 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 3.27E-8 | 785 | 871 | No hit | No description |
Pfam | PF02309 | 5.2E-8 | 787 | 881 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 22.582 | 795 | 879 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 927 aa Download sequence Send to blast |
MNLSPSAAAG GGLPDQPASP EVSEEHKCLN SELWHACAGP LVSLPAVGSR VLYFPQGHSE 60 QVSASTNKEM ESQIPNYPNL PAQLICQLHN VTMHADAETD EVYAQMTLQP LSPQELKDPF 120 LPAELGNASK QPTNYFCKTL TASDTSTHGG FSVPRRAAEK VFPPLDFTQQ PPAQELMAKD 180 LHGNEWKFRH IFRGQPKRHL LTTGWSVFIS AKRLVAGDSV LFIWNDNNQL LLGIRRANRS 240 QTVMPSSVLS SDSMHIGLLA AAAHAASTNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR 300 ISVGMRFRML FETEESSVRR YMGTITGISD LDPARWPNSH WRSVKVGWDE STAGERQPRV 360 SLWEIEPLTT YPMYSSPFPM RLKRPWPTGL PSLYGGKEDD LTSSLMWLRD GANPGFQSFN 420 FGGLGMSPWM QPRMDSSLLG LQPDMYQAMS AAAFQNTTKQ VSPTLLQFQQ PQNIAGRSAL 480 LSSQILQQVQ PQFQEMHHQN INDSAIQGHN QSEYLQQQLQ RCQSFNGQKS PPPQQQESHH 540 QHQQQQSQCM QTPQHQQMQE QKHSPDFQCV PNGLLVFSQL SSTNQSPPST LQTVSAFSQQ 600 QNLQDRNISS LAPSNVPSMH DTLRPFPSEA GSNLQGVPRT TPVPVSDPWS SKRVAMESVI 660 PSSSHVNSSH MQQLDSEPSN IPQSSSLAPL PGRECLVDQD GNSDNQNHLL FGVNIDSQSL 720 LMQGGIPSLQ EDNGCIASLQ DDNDSSTIPY STCNFLSPSQ NDFPLNEALA SSGCLDESGY 780 ASFSENSDHV NQPTAAFVKV YKSGAFGRLL DITKFSNYHE LRSEVGRLFG LEGQLEDPAR 840 SGWQLVFVDR EDDILLVGDD PWQEFVNSVS CIKILTPQEV QQMGKQGIDL LSSAPARRLG 900 NSCDNYAGRQ ESRSLSTVIA SVGSVEF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-162 | 29 | 371 | 51 | 393 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020199461.1 | 0.0 | auxin response factor 6-like | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A3B6QC06 | 0.0 | A0A3B6QC06_WHEAT; Auxin response factor | ||||
TrEMBL | A0A453NFY9 | 0.0 | A0A453NFY9_AEGTS; Auxin response factor | ||||
STRING | Traes_6DS_F95C12EBB.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2012 | 36 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Publications ? help Back to Top | |||
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