PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_F00EB2E01.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 192aa    MW: 20888.6 Da    PI: 10.4651
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_F00EB2E01.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.41.3e-1976130256
                            T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            rk+ ++t+eq   Le+ F++++ +s+ e+++LA +lgL+ rqV vWFqNrRa+ k
  Traes_6DS_F00EB2E01.1  76 RKKLRLTAEQAALLEKSFRSHNVLSHGEKQDLAGQLGLKPRQVEVWFQNRRARTK 130
                            788899***********************************************98 PP
2HD-ZIP_I/II113.11.8e-3676163188
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            +kk+rl++eq++lLE+sF++++ L++ +K++la +Lgl+prqv+vWFqnrRARtk+kq+E d+e L+r++++l+++n+rL++e +e +
  Traes_6DS_F00EB2E01.1  76 RKKLRLTAEQAALLEKSFRSHNVLSHGEKQDLAGQLGLKPRQVEVWFQNRRARTKLKQTELDCELLRRWCERLSDDNARLRRELAETH 163
                            69********************************************************************************998866 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-1951133IPR009057Homeodomain-like
SuperFamilySSF466891.07E-1860133IPR009057Homeodomain-like
PROSITE profilePS5007117.34672132IPR001356Homeobox domain
SMARTSM003892.2E-1674136IPR001356Homeobox domain
CDDcd000862.06E-1376133No hitNo description
PfamPF000465.7E-1776130IPR001356Homeobox domain
PRINTSPR000312.8E-6103112IPR000047Helix-turn-helix motif
PROSITE patternPS000270107130IPR017970Homeobox, conserved site
PRINTSPR000312.8E-6112128IPR000047Helix-turn-helix motif
SMARTSM003409.7E-11132175IPR003106Leucine zipper, homeobox-associated
PfamPF021831.5E-6132161IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MSSLTTISST SKESLEAEEL VDTRLSLVIG AGSQPPPAPV AAGHVTRQHA KRARAVHGGS  60
DVDDGDDGGD AAGRARKKLR LTAEQAALLE KSFRSHNVLS HGEKQDLAGQ LGLKPRQVEV  120
WFQNRRARTK LKQTELDCEL LRRWCERLSD DNARLRRELA ETHAVLLVGG AQGSRLTRCP  180
SCNRLAGGRR AA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17379RARKKLR
2124132RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189356.11e-107putative homeobox-leucine zipper protein HOX26
SwissprotQ67UX66e-43HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26
TrEMBLA0A3B6QEE61e-134A0A3B6QEE6_WHEAT; Uncharacterized protein
STRINGTraes_6DS_F00EB2E01.11e-135(Triticum aestivum)
STRINGTraes_6DS_F00EB2E011.11e-135(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83153249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22800.17e-41HD-ZIP family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]