PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DS_DF339D22F.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 138aa MW: 14273.5 Da PI: 10.811 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.8 | 3.7e-08 | 32 | 57 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ Traes_6DS_DF339D22F.1 32 KTKLCNKYNTAEGCKWGDKCHFAHGE 57 8***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1000.10 | 3.5E-14 | 29 | 60 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.97E-9 | 29 | 61 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.216 | 30 | 58 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-5 | 32 | 57 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54814 | 4.12E-7 | 94 | 137 | IPR009019 | K homology domain, prokaryotic type |
PROSITE profile | PS50084 | 12.118 | 101 | 138 | IPR004088 | K Homology domain, type 1 |
Pfam | PF00013 | 7.6E-6 | 103 | 136 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 4.74E-7 | 103 | 138 | No hit | No description |
Gene3D | G3DSA:3.30.1370.10 | 4.9E-7 | 103 | 137 | IPR004088 | K Homology domain, type 1 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 138 aa Download sequence Send to blast |
MSNLGGQAFA HPQGRMPAGS AVPDGPLTPT VKTKLCNKYN TAEGCKWGDK CHFAHGEREL 60 GKHMFINKSM PPHMGPRPTG HFGPPAMPSP AMTIPAGFGA SSTAKVSVDA SLAGGIIGRG 120 GVNTKQISRV TGAKLAIR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HQ390773 | 1e-83 | HQ390773.1 Triticum aestivum clone UCDTA01224 genomic sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164559.1 | 1e-96 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 5e-70 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A3B6QFY3 | 4e-94 | A0A3B6QFY3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6DS_DF339D22F.1 | 4e-97 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 2e-17 | C3H family protein |
Publications ? help Back to Top | |||
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