PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DS_C2282AFF4.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | C3H | ||||||||
Protein Properties | Length: 153aa MW: 16951 Da PI: 11.6066 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.6 | 4.3e-08 | 109 | 134 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck Gd+C+FaHg+ Traes_6DS_C2282AFF4.2 109 KTKLCNKYNTAEGCKWGDKCHFAHGE 134 8***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 6.916 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.7E-14 | 104 | 137 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 7.2E-9 | 106 | 138 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.216 | 107 | 135 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.1E-5 | 109 | 134 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
PPSAPARRHH SQATNPSQAR RSYRARARSD GRRRPQEGHG RWRRRRRQAH ASTSGCPFGE 60 GCHFLHYFPG GHQAVAKMSN LGGQAFAHPQ GRMPTGSAVP DGHPTPTVKT KLCNKYNTAE 120 GCKWGDKCHF AHGERELGKQ TFINNSMPPH MGP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 31 | 46 | RRRPQEGHGRWRRRRR |
2 | 39 | 47 | GRWRRRRRQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020164455.1 | 7e-72 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 4e-57 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A287TVT2 | 4e-78 | A0A287TVT2_HORVV; Uncharacterized protein | ||||
STRING | Traes_6DS_C2282AFF4.2 | 1e-109 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1254 | 38 | 127 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12130.1 | 9e-12 | C3H family protein |
Publications ? help Back to Top | |||
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