PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_6DS_A0EC5D808.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 378aa MW: 41337.8 Da PI: 6.5761 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 55 | 1.9e-17 | 6 | 53 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT++Ed+llv+ v+++G g+W+++ r+ g+ R++k+c++rw ++l Traes_6DS_A0EC5D808.1 6 KGPWTPDEDQLLVEHVRRHGEGSWNAVRRETGLLRCGKSCRLRWANHL 53 79******************************99**********9986 PP | |||||||
2 | Myb_DNA-binding | 51.7 | 2.1e-16 | 59 | 102 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg++++eE+ l+++++++ G++ W++I+++++ gRt++++k++w++ Traes_6DS_A0EC5D808.1 59 RGPFSPEEERLILRLHALIGNK-WARISAHLP-GRTDNEIKNYWNT 102 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.158 | 1 | 53 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-31 | 3 | 100 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-14 | 5 | 55 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-16 | 6 | 53 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 7 | 60 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.93E-12 | 8 | 53 | No hit | No description |
PROSITE pattern | PS00175 | 0 | 21 | 30 | IPR001345 | Phosphoglycerate/bisphosphoglycerate mutase, active site |
PROSITE profile | PS51294 | 26.724 | 54 | 108 | IPR017930 | Myb domain |
SMART | SM00717 | 6.8E-17 | 58 | 106 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 9.6E-16 | 59 | 102 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-26 | 61 | 107 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.19E-12 | 61 | 104 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003824 | Molecular Function | catalytic activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 378 aa Download sequence Send to blast |
GGRLKKGPWT PDEDQLLVEH VRRHGEGSWN AVRRETGLLR CGKSCRLRWA NHLRPNLKRG 60 PFSPEEERLI LRLHALIGNK WARISAHLPG RTDNEIKNYW NTRLKRRKRA GMALYPPDVE 120 REVALVRAGK LRPIVDADGN ASSLQAPLLL DAAADQFAWP AAPPFHPAYN NVAPPQPFQF 180 TGNISHNPQA LLAAQVPYLH HDEVSAGLGH ANKLYADAPG MPPLVPPAVQ ELPSNQSPAD 240 AGGPLEMLVL EQDQRLPGAA LLRVTSMPEL VYNENDYSAW PSGLSGGSGS RSEGDVTSHY 300 GGKCDCFGAD GVKPAKRMAA SLVVAEEEVS GLFGGEDLVE VWPDKPPESI TKDDFNLQME 360 MQHLMPPVPL SADEHGLN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-29 | 4 | 107 | 5 | 107 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK373108 | 0.0 | AK373108.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3021G02. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020171960.1 | 0.0 | transcription factor MYB104-like | ||||
TrEMBL | A0A453NF98 | 0.0 | A0A453NF98_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6DS_A0EC5D808.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12397 | 26 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G32460.2 | 9e-61 | myb domain protein 101 |
Publications ? help Back to Top | |||
---|---|---|---|
|