PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DS_A08A13944.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GRAS | ||||||||
Protein Properties | Length: 69aa MW: 7488.36 Da PI: 4.033 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 39.9 | 6.2e-13 | 9 | 60 | 193 | 249 |
GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249 L+++p+E+laVn+vl lhrl +++l +++L+ v+s++P vv+++e+e + + Traes_6DS_A08A13944.1 9 CLELHPDETLAVNCVLFLHRLS-GDGEL----TAFLRWVRSMNPAVVTIAEREGEAG 60 5899*****************7.44555....55*******************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 9.246 | 1 | 69 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.1E-10 | 9 | 60 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 69 aa Download sequence Send to blast |
QLAADPAACL ELHPDETLAV NCVLFLHRLS GDGELTAFLR WVRSMNPAVV TIAEREGEAG 60 RGEDDDDLP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JF710617 | 6e-81 | JF710617.1 Hordeum vulgare lateral suppressor 2 (LAS2) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020196668.1 | 1e-40 | protein MONOCULM 1-like | ||||
Swissprot | Q84MM9 | 1e-19 | MOC_ORYSJ; Protein MONOCULM 1 | ||||
TrEMBL | A0A453NLV0 | 3e-40 | A0A453NLV0_AEGTS; Uncharacterized protein | ||||
TrEMBL | A0A453NM65 | 2e-39 | A0A453NM65_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6DS_A08A13944.1 | 3e-43 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3653 | 34 | 79 |