PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DS_8BE5BE6AC.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ARF | ||||||||
Protein Properties | Length: 1129aa MW: 125319 Da PI: 6.3236 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.3 | 2.6e-22 | 132 | 233 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+k+lt sd++++g +++p++ ae++ +++++++ +l+ +d + ++W++++i+r++++r++lt+GW+ Fv+ ++L +gD+v+F Traes_6DS_8BE5BE6AC.1 132 FCKTLTASDTSTHGGFSVPRRAAEKIfpsldfSLQPPCQ-ELQARDIHDNVWTFRHIFRGQPKRHLLTTGWSLFVSGKKLFAGDSVIF 218 99******************************9999986.************************************************ PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 ++++++l+++++r+ Traes_6DS_8BE5BE6AC.1 219 V--RDEKQQLLLGIRRA 233 *..5688889****997 PP | |||||||
2 | Auxin_resp | 114.9 | 7.4e-38 | 258 | 341 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha +++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+ ete+ +rr++Gt++g+sdldpvrW+nS+WrsL+ Traes_6DS_8BE5BE6AC.1 258 AAHASANTSPFTIFYNPRASPTEFVIPFAKYQKAMYsNQISLGMRFRMMCETEELGTRRYMGTITGISDLDPVRWKNSQWRSLQ 341 799********************************989********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 2.35E-41 | 121 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-39 | 124 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.31E-18 | 131 | 223 | No hit | No description |
PROSITE profile | PS50863 | 11.448 | 132 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.5E-20 | 132 | 233 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.1E-21 | 132 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.0E-33 | 258 | 341 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 4.3E-8 | 993 | 1081 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.947 | 996 | 1080 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 2.84E-6 | 1010 | 1075 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1129 aa Download sequence Send to blast |
MAQSPASSAV AAPAPCEGER KAPAINGELW HACAGPLVSL PPVGSLVVYF PQGHSEQVAA 60 SMQKDVEAHV PSYPNLPSKL ICLLHSVTLQ ADPDTDEVYA QMTLQPVNTY AKEALQLSEL 120 ALRQARPQME FFCKTLTASD TSTHGGFSVP RRAAEKIFPS LDFSLQPPCQ ELQARDIHDN 180 VWTFRHIFRG QPKRHLLTTG WSLFVSGKKL FAGDSVIFVR DEKQQLLLGI RRANRQPTNI 240 SSSVLSSDSM HIGVLAAAAH ASANTSPFTI FYNPRASPTE FVIPFAKYQK AMYSNQISLG 300 MRFRMMCETE ELGTRRYMGT ITGISDLDPV RWKNSQWRSL QVGWDESAAG ERRNRVSIWE 360 IEPLAAPFFI CPQPFFGVKR PRQLDDESLE MESLMKRAMP WLGEEICIKD PQTQSATMPG 420 LSLVQWMNMN RQQSSSLAST AMQSEYLRSA SNPAMQNIGA ADLARQLYMQ NHLLQQNSMQ 480 FNPPKLHQQM KPINDLSNAA LPLNQLGAIR NHQDQKQDQQ RQQQSGIQAI PLSQAQAQTN 540 IVQAQVILQN QMQQQQQQKQ PPPSPTQNQH GASGQHLLQS HQLQDQNLQM QQQQLLLHQQ 600 LQQQQQLNKL PGQLANLASQ QTQLSDQELH LQLLQKLQQQ SLMSQSAVTL SRLPIIQEQQ 660 NFLVDMQQQL SNSHSLAQQQ VMPQQDCRTS SSQTTQLPPP IQQEQQQQKP SQKQVAPTYV 720 SEAAFAQISS TSVIPKTGNS MIVPGAAQSA VTEEIPSCST SPSTANGNHL VQPTIGRNDH 780 CKISTEKVPH SIAQMSILTP IEAVSVTPVT TKELPKLNNG VKSSAITSKL PNVVSGLQNF 840 MNNALPTDNL ETASSATSLW PSQTDGLLHQ GFATSNFNQH QMFKDELPDV EIQGVDPSNS 900 ALFGMNNDGP LGFPMETEGL LENALDSVKY QNHFSTDDEN NYQMQKDARQ EISTSMVSQS 960 FGQSDMAFNS IDSAINDGAL MNRSSWPPAA PPQRMRTFTK VYKRGAVGRS IDIGRFSGYG 1020 ELNQALARMF GIEGQLEDRQ RIGWKLVYTD HEDDVLLLGD DPWEEFVNCV KCIRILSPQE 1080 VQKMSLDGDL GSNVLPNQAC SSSDGGNTWK PRYEQNSGNP SIGPYDQFE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-163 | 18 | 362 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020155071.1 | 0.0 | auxin response factor 5-like isoform X1 | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A3B6QBJ5 | 0.0 | A0A3B6QBJ5_WHEAT; Auxin response factor | ||||
TrEMBL | A0A453NA46 | 0.0 | A0A453NA46_AEGTS; Auxin response factor | ||||
STRING | Traes_6DS_8BE5BE6AC.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1409 | 35 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Publications ? help Back to Top | |||
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