PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_45417CBA9.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family G2-like
Protein Properties Length: 364aa    MW: 39476.9 Da    PI: 8.4617
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_45417CBA9.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1017.6e-323994155
                G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRl 55
                           kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQ k+Rl
  Traes_6DS_45417CBA9.2 39 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQqKFRL 94
                           79************************************************648997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.8843696IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-303694IPR009057Homeodomain-like
SuperFamilySSF466892.15E-143892IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-213994IPR006447Myb domain, plants
PfamPF002497.3E-84190IPR001005SANT/Myb domain
PfamPF143798.0E-20136191IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MFSSKKATSS SAGAVAVQGG GAPMCVQGDS GLVLTTDPKP RLRWTVELHE RFVDAVAQLG  60
GPDKATPKTI MRVMGVKGLT LYHLKSHLQQ KFRLGKQPHK DFNDHAVKDA AAAMEMHRNA  120
ASSSGIMGRN MNDRNVHMNE AIRMQMEVQR RLHEQLEVIN QPRIKVQKHL QMRIEAQGKY  180
MQSILEKAYQ TLATGDVAAS PTAGYKSLGS HAGVLDVCSI KDIGPASMGF PSLQDLHLYG  240
GGHLDLQQQQ QPLESFFACS DGGGIGSLGK KRSSQYAGGK SPMMWGDDED GDEDDKGDQL  300
LQMAPPMMDD IDSMYEAKPM MTMSGDSAGS RGFDGGMGSK LERPSPRRPH MGAQRMGSPS  360
VIYG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A5e-173996157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B5e-173996157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C5e-173996157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D5e-173996157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3573630.0AK357363.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1051J01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150563.10.0myb family transcription factor APL-like isoform X1
SwissprotQ9SAK53e-93APL_ARATH; Myb family transcription factor APL
TrEMBLA0A3B6NPE10.0A0A3B6NPE1_WHEAT; Uncharacterized protein
TrEMBLA0A446VA210.0A0A446VA21_TRITD; Uncharacterized protein
STRINGTraes_6DS_45417CBA9.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25043890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79430.29e-81G2-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Martínez-Navarro AC,Galván-Gordillo SV,Xoconostle-Cázares B,Ruiz-Medrano R
    Vascular gene expression: a hypothesis.
    Front Plant Sci, 2013. 4: p. 261
    [PMID:23882276]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Kondo Y, et al.
    Vascular Cell Induction Culture System Using Arabidopsis Leaves (VISUAL) Reveals the Sequential Differentiation of Sieve Element-Like Cells.
    Plant Cell, 2016. 28(6): p. 1250-62
    [PMID:27194709]
  5. Shibuta M,Abe M
    FE Controls the Transcription of Downstream Flowering Regulators Through Two Distinct Mechanisms in Leaf Phloem Companion Cells.
    Plant Cell Physiol., 2017. 58(11): p. 2017-2025
    [PMID:29036620]