PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DS_45417CBA9.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | G2-like | ||||||||
Protein Properties | Length: 364aa MW: 39476.9 Da PI: 8.4617 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101 | 7.6e-32 | 39 | 94 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ.kYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQ k+Rl Traes_6DS_45417CBA9.2 39 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQqKFRL 94 79************************************************648997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.884 | 36 | 96 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-30 | 36 | 94 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.15E-14 | 38 | 92 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.1E-21 | 39 | 94 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 7.3E-8 | 41 | 90 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 8.0E-20 | 136 | 191 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MFSSKKATSS SAGAVAVQGG GAPMCVQGDS GLVLTTDPKP RLRWTVELHE RFVDAVAQLG 60 GPDKATPKTI MRVMGVKGLT LYHLKSHLQQ KFRLGKQPHK DFNDHAVKDA AAAMEMHRNA 120 ASSSGIMGRN MNDRNVHMNE AIRMQMEVQR RLHEQLEVIN QPRIKVQKHL QMRIEAQGKY 180 MQSILEKAYQ TLATGDVAAS PTAGYKSLGS HAGVLDVCSI KDIGPASMGF PSLQDLHLYG 240 GGHLDLQQQQ QPLESFFACS DGGGIGSLGK KRSSQYAGGK SPMMWGDDED GDEDDKGDQL 300 LQMAPPMMDD IDSMYEAKPM MTMSGDSAGS RGFDGGMGSK LERPSPRRPH MGAQRMGSPS 360 VIYG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 5e-17 | 39 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 5e-17 | 39 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 5e-17 | 39 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 5e-17 | 39 | 96 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for phloem identity. Has a dual role both in promoting phloem differentiation and in repressing xylem differentiation during vascular development. Regulates the expression of the transcription factor NAC045 (AC A4VCM0). May activate the transcription of specific genes involved in phosphate uptake or assimilation (PubMed:15592750). Promotes flowering through transcriptional activation of both FT and its transport machinery component, FTIP1 (PubMed:26239308). {ECO:0000269|PubMed:14614507, ECO:0000269|PubMed:18523061, ECO:0000269|PubMed:25081480, ECO:0000269|PubMed:26239308, ECO:0000305|PubMed:15592750}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by phosphate deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK357363 | 0.0 | AK357363.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1051J01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020150563.1 | 0.0 | myb family transcription factor APL-like isoform X1 | ||||
Swissprot | Q9SAK5 | 3e-93 | APL_ARATH; Myb family transcription factor APL | ||||
TrEMBL | A0A3B6NPE1 | 0.0 | A0A3B6NPE1_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A446VA21 | 0.0 | A0A446VA21_TRITD; Uncharacterized protein | ||||
STRING | Traes_6DS_45417CBA9.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2504 | 38 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79430.2 | 9e-81 | G2-like family protein |
Publications ? help Back to Top | |||
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