PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_432113694.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family FAR1
Protein Properties Length: 580aa    MW: 68600.7 Da    PI: 8.1275
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_432113694.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.41.2e-2320110191
                   FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnH 87 
                            +fYn+YA e GFsvrk + +  + n++i+ r++vCs+e k+ ++k++ +++r+ r+ tr+gCk k+++ +   + +w v+++  eHnH
  Traes_6DS_432113694.1  20 EFYNKYALEKGFSVRKGYVEWDEANEKIILRKLVCSREEKHMKRKRE-DRKRKARNITRVGCKVKFVIVRVAkTRRWFVKDFIDEHNH 106
                            6*******************************************999.9****************988777669************** PP

                   FAR1  88 elap 91 
                            +lap
  Traes_6DS_432113694.1 107 PLAP 110
                            *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.1E-2120110IPR004330FAR1 DNA binding domain
PfamPF105512.4E-34231325IPR018289MULE transposase domain
PROSITE profilePS509669.94509548IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MAEYDDIVSR MFDSEEEGFE FYNKYALEKG FSVRKGYVEW DEANEKIILR KLVCSREEKH  60
MKRKREDRKR KARNITRVGC KVKFVIVRVA KTRRWFVKDF IDEHNHPLAP RDLSCFLRSH  120
RRISDERKAD IIEMESVGIK KYKIMDVLCM QYGGYDHVGC TTRDVYNLCH RYKQETVAGG  180
DAQTVIRHMM ARQERDPDYI FNYLVDKAGH LKGLFWSDTQ SRLDYEAFGD VVVFYSTYRT  240
NKYNLLFVPF VGLNHHRSTV IFGCGVISHE TNEAYEWMLR TFSEAMSQKH PISVITDGDH  300
AMQRAIRVVW PDSYHRLCVW HIQQNIVRHL HDDEVREEFR SFIYDSSSIE EHERKWIEFL  360
RRNEVTSEES WLHQMYQMRK LWCAPYLVGR CFLGLSSNQR SESLNSVLHT HLEGKMTLFD  420
MLEHYERCLS GRRLNEAILD IVALQSVPFT DADASSLEKH AARVFTPCMF ELVRWSINAI  480
SKCVISEILD AWELTTYVVA KIDRREKKFE VRCEVKEGSL YRISCSCRKL ECLGTPCSHI  540
FYILGIRQVE LLPRCCVPMR WTMSAKSAFP PTRKSEMYDY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16370KREDRKRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150962.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A453MVG20.0A0A453MVG2_AEGTS; Uncharacterized protein
STRINGTraes_6DS_432113694.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-89FAR1-related sequence 5
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]