PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DS_3D001FAB6.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Nin-like | ||||||||
Protein Properties | Length: 325aa MW: 34551.6 Da PI: 5.6819 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 86.2 | 2.8e-27 | 93 | 140 | 5 | 52 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +sl++l+ yFs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki+++ Traes_6DS_3D001FAB6.1 93 VSLKELQGYFSGSLKDAARSLGVCPTTMKRICRQHGISRWPFRKISKV 140 799******************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.699 | 76 | 162 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.8E-25 | 93 | 140 | IPR003035 | RWP-RK domain |
SuperFamily | SSF54277 | 3.92E-19 | 213 | 285 | No hit | No description |
SMART | SM00666 | 1.5E-18 | 218 | 312 | IPR000270 | PB1 domain |
PROSITE profile | PS51745 | 16.651 | 218 | 312 | IPR000270 | PB1 domain |
Gene3D | G3DSA:3.10.20.240 | 4.8E-24 | 219 | 285 | No hit | No description |
Pfam | PF00564 | 4.9E-13 | 219 | 288 | IPR000270 | PB1 domain |
CDD | cd06407 | 9.95E-35 | 219 | 311 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MVDAVAATIR KECSGNHLEA TSDLQDLSLE AVLADADTAH ELNDRGDYDT NDSDEEDGDQ 60 AGGVHGADQS GAEDRVPQPE MKKKTGRKAG RPVSLKELQG YFSGSLKDAA RSLGVCPTTM 120 KRICRQHGIS RWPFRKISKV NRALGKIRAI ESADCSPKPT AAASSTSRRA PAPHLPCLSS 180 ALGEDTSSQG SSQDPPPLTK TTMRKSLLWR SNGAEGELVT IKANYRGDII RFRVSCSAGV 240 AAVKEEVAKR LGLDAGAFDV KYLDDDHEWV LLSCDADFQE CLDVAPGLPA SATMAGGAGV 300 VSPVVRLMVQ EVVADNHRSS CGSSD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364314 | 0.0 | AK364314.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023L01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020153726.1 | 0.0 | protein NLP3-like isoform X2 | ||||
Swissprot | Q8RWY4 | 3e-47 | NLP6_ARATH; Protein NLP6 | ||||
TrEMBL | A0A453N804 | 0.0 | A0A453N804_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6DS_3D001FAB6.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6269 | 29 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76350.1 | 7e-33 | Nin-like family protein |
Publications ? help Back to Top | |||
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