PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_3D001FAB6.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 325aa    MW: 34551.6 Da    PI: 5.6819
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_3D001FAB6.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK86.22.8e-2793140552
                 RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            +sl++l+ yFs+++kdAA++Lgvc+T++KriCRq+GI+RWP+Rki+++
  Traes_6DS_3D001FAB6.1  93 VSLKELQGYFSGSLKDAARSLGVCPTTMKRICRQHGISRWPFRKISKV 140
                            799******************************************997 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.69976162IPR003035RWP-RK domain
PfamPF020423.8E-2593140IPR003035RWP-RK domain
SuperFamilySSF542773.92E-19213285No hitNo description
SMARTSM006661.5E-18218312IPR000270PB1 domain
PROSITE profilePS5174516.651218312IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2404.8E-24219285No hitNo description
PfamPF005644.9E-13219288IPR000270PB1 domain
CDDcd064079.95E-35219311No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVDAVAATIR KECSGNHLEA TSDLQDLSLE AVLADADTAH ELNDRGDYDT NDSDEEDGDQ  60
AGGVHGADQS GAEDRVPQPE MKKKTGRKAG RPVSLKELQG YFSGSLKDAA RSLGVCPTTM  120
KRICRQHGIS RWPFRKISKV NRALGKIRAI ESADCSPKPT AAASSTSRRA PAPHLPCLSS  180
ALGEDTSSQG SSQDPPPLTK TTMRKSLLWR SNGAEGELVT IKANYRGDII RFRVSCSAGV  240
AAVKEEVAKR LGLDAGAFDV KYLDDDHEWV LLSCDADFQE CLDVAPGLPA SATMAGGAGV  300
VSPVVRLMVQ EVVADNHRSS CGSSD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3643140.0AK364314.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2023L01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020153726.10.0protein NLP3-like isoform X2
SwissprotQ8RWY43e-47NLP6_ARATH; Protein NLP6
TrEMBLA0A453N8040.0A0A453N804_AEGTS; Uncharacterized protein
STRINGTraes_6DS_3D001FAB6.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62692939
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.17e-33Nin-like family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Liseron-Monfils C, et al.
    Nitrogen transporter and assimilation genes exhibit developmental stage-selective expression in maize (Zea mays L.) associated with distinct cis-acting promoter motifs.
    Plant Signal Behav, 2014.
    [PMID:24270626]
  3. Guan P, et al.
    Interacting TCP and NLP transcription factors control plant responses to nitrate availability.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424
    [PMID:28202720]
  4. Guan P
    Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 1697
    [PMID:29033968]