PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6DS_3ABDAEE6E.1

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

HB-other

Protein Properties

Length: 292aa MW: 32095.9 Da PI: 7.1338

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6DS_3ABDAEE6E.1	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.9	8.4e-09	2	40	14	52
HHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 14 eLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +L + F+++ p++e +e L+++lg++ +++ WF+N R Traes_6DS_3ABDAEE6E.1 2 VLRKSFAESELPTREVKENLSTELGISFEKIDKWFKNTR 40 799**********************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00086	1.58E-7	1	50	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.8E-8	1	40	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.693	1	46	IPR001356	Homeobox domain
SMART	SM00389	0.01	1	50	IPR001356	Homeobox domain
Pfam	PF00046	3.3E-6	2	40	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.33E-7	2	52	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
KVLRKSFAES ELPTREVKEN LSTELGISFE KIDKWFKNTR CAALRDRKAE GNSRVAGPSK 60 RSRQSAGKSG SSGKIDPVDN SYLLPVPEII SVPTHPQGIP ERKPESTSRT ARRRVHDKGA 120 PLCPPAPTEV KESTSPTTKP GLNPSHVADR IINTEHRAAS REDPVAFSDD PFFDAILSYP 180 TINTNDRAVS REDPVAFSDD PFLDVMLANR DIYTEERAAS HEDLRRPSSD QPFLDVIQNV 240 CGLEHRLQRL KGDMLSSAAA PGGAGTAERD LQNQLVVLVP TAELKDKSQP SI

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020158010.1	0.0	pathogenesis-related homeodomain protein isoform X2
Refseq	XP_020158011.1	0.0	pathogenesis-related homeodomain protein isoform X3
TrEMBL	A0A453NBB0	0.0	A0A453NBB0_AEGTS; Uncharacterized protein
STRING	Traes_6DS_3ABDAEE6E.1	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8550	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	5e-12	pathogenesis related homeodomain protein A

Publications ? help Back to Top
Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]