PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Traes_6DS_20D189350.2

Organism

Triticum aestivum

Taxonomic ID

4565

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum

Family

G2-like

Protein Properties

Length: 386aa MW: 42631.6 Da PI: 6.751

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Traes_6DS_20D189350.2	genome	IWGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	98.9	3.6e-31	222	276	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt eLHerFvea+++LGG+ekAtPk +l+lmkv+gLt+ hvkSHLQ YR Traes_6DS_20D189350.2 222 KTRMRWTLELHERFVEALKKLGGPEKATPKGVLKLMKVEGLTIFHVKSHLQNYRH 276 68****************************************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.086	219	279	IPR017930	Myb domain
SuperFamily	SSF46689	3.94E-16	219	276	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.9E-27	221	276	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.1E-24	222	276	IPR006447	Myb domain, plants
Pfam	PF00249	4.6E-9	224	275	IPR001005	SANT/Myb domain
Pfam	PF14379	7.1E-21	310	355	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MSTQSVIPVK HFIAPDIRAH TCNAPQPSVH QMFNAKSDIY SSADDTSRVS YADLSDPNSS 60 SSSTFCTSMY SSSSTKPSGF SFLPHPSKCE QQQVSAAKSS SSSLLFAADP STGVHGDLEH 120 PLDLKDFLNL SGNASDSSFR GGGNAMDFSE QLEFQFLSEQ LGIAITDNEE SPRLDDIYGI 180 PPQCSPSLVS PSSDHEDLRS GGSPVEAQLT SSHSSSGATC SKTRMRWTLE LHERFVEALK 240 KLGGPEKATP KGVLKLMKVE GLTIFHVKSH LQNYRHVKYI PEKKEVKRPC SEDNNAKSAS 300 GIDSGNKKSF QMAETLRMQM EVQKQLHEQL EVQRELQLRI EEHARYLQQI LEQQKARKST 360 VPKPEEKTEV NTTSAPPLKR KISDTE

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MSTQSVIPVK HFIAPDIRAH TCNAPQPSVH QMFNAKSDIY SSADDTSRVS YADLSDPNSS  60
SSSTFCTSMY SSSSTKPSGF SFLPHPSKCE QQQVSAAKSS SSSLLFAADP STGVHGDLEH  120
PLDLKDFLNL SGNASDSSFR GGGNAMDFSE QLEFQFLSEQ LGIAITDNEE SPRLDDIYGI  180
PPQCSPSLVS PSSDHEDLRS GGSPVEAQLT SSHSSSGATC SKTRMRWTLE LHERFVEALK  240
KLGGPEKATP KGVLKLMKVE GLTIFHVKSH LQNYRHVKYI PEKKEVKRPC SEDNNAKSAS  300
GIDSGNKKSF QMAETLRMQM EVQKQLHEQL EVQRELQLRI EEHARYLQQI LEQQKARKST  360
VPKPEEKTEV NTTSAPPLKR KISDTE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-24	222	279	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-24	222	279	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-24	222	279	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-24	222	279	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-24	222	279	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-24	222	279	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-24	222	279	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-24	222	279	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in phosphate starvation signaling (PubMed:26082401). Binds to P1BS, an imperfect palindromic sequence 5'-GNATATNC-3', to promote the expression of inorganic phosphate (Pi) starvation-responsive genes (PubMed:26082401). Functionally redundant with PHR1 and PHR2 in regulating Pi starvation response and Pi homeostasis (PubMed:26082401). {ECO:0000269\|PubMed:26082401}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated under Pi starvation conditions. {ECO:0000269\|PubMed:26082401}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP330484	0.0	KP330484.1 Triticum aestivum MYB transcription factor SM153-2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020187502.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3-like
Refseq	XP_020187503.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3-like
Refseq	XP_020187504.1	0.0	protein PHOSPHATE STARVATION RESPONSE 3-like
Swissprot	Q6YXZ4	1e-133	PHR3_ORYSJ; Protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A3B6QDY9	0.0	A0A3B6QDY9_WHEAT; Uncharacterized protein
TrEMBL	A0A453N939	0.0	A0A453N939_AEGTS; Uncharacterized protein
STRING	Traes_6DS_20D189350.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4526	37	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13040.2	6e-74	G2-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Brenchley R, et al. Analysis of the bread wheat genome using whole-genome shotgun sequencing. Nature, 2012. 491(7426): p. 705-10 [PMID:23192148]