PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_1FC471B7F.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Whirly
Protein Properties Length: 245aa    MW: 26893.7 Da    PI: 9.4236
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_1FC471B7F.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly183.15e-57682052139
                 Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGk 89 
                            v+k+kaal++ +++p f++++sg  +++r+G+++l++ +a+++rkyd+ kkq fals+tev++l++l++ esceffhdp++k+s+eG+
  Traes_6DS_1FC471B7F.1  68 VFKGKAALSISPILPLFTKVESGGSRVDRNGSVMLTFFPAVGQRKYDYTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKSSHEGQ 155
                            9*************************************************************************************** PP

                 Whirly  90 vrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
                            v+k+l++ Pl    G+fvn++v n+++k+ne++svPv+kaefav+r++l+
  Traes_6DS_1FC471B7F.1 156 VKKSLSITPLGSDNGYFVNITVLNNVQKTNERLSVPVTKAEFAVMRTALS 205
                            ***********999*********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.107.1E-7355225IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.65E-6961245IPR009044ssDNA-binding transcriptional regulator
PfamPF085361.0E-5768202IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
FFVVISFCSF LTSCNGCTNK FFFVLFRGVT DLKDVLWSGS LTFKHALSTS AANVDENASV  60
KKYASYTVFK GKAALSISPI LPLFTKVESG GSRVDRNGSV MLTFFPAVGQ RKYDYTKKQL  120
FALSPTEVGS LISLGPAESC EFFHDPSMKS SHEGQVKKSL SITPLGSDNG YFVNITVLNN  180
VQKTNERLSV PVTKAEFAVM RTALSFALPH IMGWDQALST HPQSTSTSAS KPRFEQPNPA  240
SEWDR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4kop_A3e-736322112169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_B3e-736322112169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_C3e-736322112169Single-stranded DNA-binding protein WHY2, mitochondrial
4kop_D3e-736322112169Single-stranded DNA-binding protein WHY2, mitochondrial
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2499760.0AK249976.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf60h16, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180430.11e-161single-stranded DNA-bindig protein WHY2, mitochondrial
SwissprotD9J0346e-75WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A3B6QER21e-160A0A3B6QER2_WHEAT; Uncharacterized protein
TrEMBLA0A453NDU21e-159A0A453NDU2_AEGTS; Uncharacterized protein
TrEMBLA0A453NDV31e-160A0A453NDV3_AEGTS; Uncharacterized protein
STRINGTraes_6DS_1FC471B7F.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30123885
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.16e-75WHIRLY 2
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]