PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DS_1E1A89D33.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C2H2
Protein Properties Length: 411aa    MW: 46277.6 Da    PI: 5.6943
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DS_1E1A89D33.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.60.000434467223
                           EETTTTEEESSHHHHHHHHHH..T CS
                zf-C2H2  2 kCpdCgksFsrksnLkrHirt..H 23
                           +C dCgk+++++ +   H ++  H
  Traes_6DS_1E1A89D33.1 44 VCADCGKPCRSQTEVDLHKKRtgH 67
                           7*****************998666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280830IPR007087Zinc finger, C2H2
PROSITE patternPS0002804567IPR007087Zinc finger, C2H2
SuperFamilySSF469343.83E-17102165IPR009060UBA-like
Gene3DG3DSA:1.10.8.104.2E-11102157No hitNo description
PROSITE profilePS5003011.222111152IPR015940Ubiquitin-associated domain
CDDcd142904.01E-20111159No hitNo description
SMARTSM001657.9E-5113151IPR015940Ubiquitin-associated domain
PfamPF006275.5E-6113149IPR015940Ubiquitin-associated domain
SuperFamilySSF1435039.55E-25304407IPR018997PUB domain
CDDcd104611.42E-58306411No hitNo description
PfamPF094091.2E-20319389IPR018997PUB domain
SMARTSM005801.8E-20322384IPR018997PUB domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MAGLSLRCGD CGVQLRSVEE AQAHAEATSH TNFAESTEAV LNLVCADCGK PCRSQTEVDL  60
HKKRTGHAEF TDKTMEAAKP IDLEAPPKPA SEAMDVDASG SAEPQELVSP EVNKEMLGEL  120
ESMGFSTARA TRALHFSGNS TIEGAINWLS EHQEDPDIDE MPMVPANTVA NKPSLTEEEK  180
KIKAQELRER ARKKNEEEEK RMEREREKER IRIGKELLEA KKMEELNERK RIIELRRLEK  240
EEEKRAREKI RQKLEEDKAE RRRKLGLPAE APAASKPSAP PPVEEKKSAF LPVRPATKAE  300
RMRDCLRNIK QQNKEEDAKV KRAFQTLLTY IGNVVKNPDE EKFRKIRLNN ATFQERVGSL  360
GGIEFLELCG FEKPEGEEIL FLARDKVDKA VLNVAGAELN SAITNPFFGV L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2505120.0AK250512.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf74j13, mRNA sequence.
GenBankAK3600590.0AK360059.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1109E20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020150585.10.0chromatin assembly factor 1 subunit A
TrEMBLA0A3B6QDB70.0A0A3B6QDB7_WHEAT; Uncharacterized protein
STRINGTraes_6DS_1E1A89D33.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84641517
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]