PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DS_17B737547.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 225aa MW: 24759.7 Da PI: 8.353 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59 | 7.6e-19 | 106 | 160 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ ++t eq Lee F+ ++ +s+ e+ +LA++lgL+ rqV vWFqNrRa+ k Traes_6DS_17B737547.1 106 RKKLRLTVEQAALLEESFRAHNVLSHGEKHDLARQLGLKPRQVEVWFQNRRARTK 160 778899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 112.8 | 2.1e-36 | 106 | 191 | 1 | 86 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 +kk+rl+ eq++lLEesF++++ L++ +K++lar+Lgl+prqv+vWFqnrRARtk+kq+E d+e L+r++++l+++n+rL++e +e Traes_6DS_17B737547.1 106 RKKLRLTVEQAALLEESFRAHNVLSHGEKHDLARQLGLKPRQVEVWFQNRRARTKLKQTELDCELLRRWCERLSDDNARLRRELAE 191 69*******************************************************************************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 85 | 160 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.57E-18 | 90 | 163 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.329 | 102 | 162 | IPR001356 | Homeobox domain |
SMART | SM00389 | 9.3E-16 | 104 | 166 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.92E-13 | 106 | 163 | No hit | No description |
Pfam | PF00046 | 3.5E-16 | 106 | 160 | IPR001356 | Homeobox domain |
PRINTS | PR00031 | 3.7E-6 | 133 | 142 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 137 | 160 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 3.7E-6 | 142 | 158 | IPR000047 | Helix-turn-helix motif |
SMART | SM00340 | 2.2E-12 | 162 | 203 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MSSLTTISSG AMEESQEVEE LVDTRLSLVI GAASRPPPTV LALLPATSPE NEAAARRKRK 60 GQENGAGGVA ATSRQHSKRA KTVHDSSDVD DDDDDGGDAA RSDGTRKKLR LTVEQAALLE 120 ESFRAHNVLS HGEKHDLARQ LGLKPRQVEV WFQNRRARTK LKQTELDCEL LRRWCERLSD 180 DNARLRRELA ETLSSSPAFL SRLTMANDKA VCSSCNKLTS ARMPA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 104 | 110 | TRKKLRL |
2 | 154 | 162 | RRARTKLKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020189357.1 | 1e-162 | putative homeobox-leucine zipper protein HOX26 | ||||
Swissprot | Q67UX6 | 3e-44 | HOX26_ORYSJ; Putative homeobox-leucine zipper protein HOX26 | ||||
TrEMBL | A0A3B6QDN6 | 1e-161 | A0A3B6QDN6_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6DS_17B737547.1 | 1e-162 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8315 | 32 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22800.1 | 1e-37 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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