PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_FA861D610.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 233aa MW: 24940.4 Da PI: 4.7963 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53.5 | 6.1e-17 | 22 | 71 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr++k +g+Wv+eIr p++ r r++lg+++ +e+Aa+a +aa +l+g Traes_6DL_FA861D610.2 22 KYKGVRRRK-WGKWVSEIRLPNS---RERIWLGSYDAPEKAARAFDAAFVCLRG 71 8*****998.**********933...5*********************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 4.6E-27 | 21 | 84 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-29 | 22 | 88 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.799 | 22 | 82 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.42E-18 | 22 | 84 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.1E-9 | 22 | 70 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.21E-24 | 22 | 84 | No hit | No description |
PRINTS | PR00367 | 8.7E-9 | 23 | 34 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.7E-9 | 45 | 61 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSTSSPASGA ASPEAEGGGG RKYKGVRRRK WGKWVSEIRL PNSRERIWLG SYDAPEKAAR 60 AFDAAFVCLR GPGAAGADLN FPDSPPPPCR HSVDPQEVQA AALSHANRAA VSAREAAAAL 120 MDVADDCFSR APAALSTDQW SVTQPSWAQH ENGAMDIFGD EVAAAPDGSI DWRSVMAHQP 180 PLFSPTAGWG SNAYDFLQVT PPPPQGDEDM EECGHGASAS LWSFDSRDSY FRY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 23 | 29 | KGVRRRK |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00151 | DAP | Transfer from AT1G19210 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004257 | 3e-79 | AP004257.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1369_G08. | |||
GenBank | AP014958 | 3e-79 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182589.1 | 1e-168 | ethylene-responsive transcription factor RAP2-1-like | ||||
TrEMBL | A0A3B6QIZ8 | 1e-168 | A0A3B6QIZ8_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6DL_FA861D610.2 | 1e-169 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP861 | 32 | 144 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G21960.1 | 6e-22 | ERF family protein |
Publications ? help Back to Top | |||
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