PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_F4FBB448F.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family C3H
Protein Properties Length: 383aa    MW: 41537.2 Da    PI: 8.1811
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_F4FBB448F.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.49.3e-07110130425
                            ---SGGGGTS--TTTTT-SS-S CS
                zf-CCCH   4 elCrffartGtCkyGdrCkFaH 25 
                            ++C+ff++ G C yG++C++ H
  Traes_6DL_F4FBB448F.2 110 RPCKFFLA-GDCTYGEKCRYPH 130
                            79******.**********965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.842854IPR000571Zinc finger, CCCH-type
SMARTSM003560.0542853IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.342106133IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.63E-6107131IPR000571Zinc finger, CCCH-type
SMARTSM003560.0023108132IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-4110130IPR000571Zinc finger, CCCH-type
SuperFamilySSF509786.11E-41137360IPR017986WD40-repeat-containing domain
SMARTSM003209.5E-7137176IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.109.5E-39137365IPR015943WD40/YVTN repeat-like-containing domain
PfamPF004004.7E-6141176IPR001680WD40 repeat
PROSITE profilePS5029420.804144346IPR017986WD40-repeat-containing domain
PROSITE profilePS5008214.318144185IPR001680WD40 repeat
PROSITE patternPS006780163177IPR019775WD40 repeat, conserved site
PRINTSPR003206.5E-8163177IPR020472G-protein beta WD-40 repeat
SMARTSM00320190179214IPR001680WD40 repeat
SMARTSM003205.2216253IPR001680WD40 repeat
SMARTSM003200.0034260297IPR001680WD40 repeat
PfamPF004000.0028264297IPR001680WD40 repeat
PROSITE profilePS5008211.611267306IPR001680WD40 repeat
PRINTSPR003206.5E-8284298IPR020472G-protein beta WD-40 repeat
PROSITE patternPS006780284298IPR019775WD40 repeat, conserved site
SMARTSM003203.7E-4300337IPR001680WD40 repeat
PfamPF004000.017302336IPR001680WD40 repeat
PRINTSPR003206.5E-8324338IPR020472G-protein beta WD-40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDFEADGRFG NKRVHNRLGP APGAASSSSS TKVCIHWRAG RCNRFPCPFL HSELPEAATT  60
KRPNQRDGPG GHVWRNPNSG GGGRGGGGFN KWGRGPGGAD GGVRHKVPDR PCKFFLAGDC  120
TYGEKCRYPH TYCMSNSITL LTPLQGHEKV VTGIALPTGS DKLYSGSKDG TVRLWDCQTG  180
QCAGVLPVGG EVGCMISEGP WLFVGIPDAV KVWNMQTQAE MNLTGPTGQV YALAIGNELL  240
FAATQDGRIL AWRFSTVTNC FEPAASLTGH QLAVVSLIVG GMRLYSGSMD KTIRVWDLAT  300
LQCIQTLSDH TNVVMSLLCW DQFLLSCSLD QTIKVWAATE SGNLEVTYTH KEENKLTCWA  360
VKHEQIWHTV WLGKAEVATS HGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A4e-221413366322Tako8
6g6n_A4e-221413366322Tako8
6g6n_B4e-221413366322Tako8
6g6n_C4e-221413366322Tako8
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18187GGRGGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3594520.0AK359452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1097E17.
GenBankAK3627330.0AK362733.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2009M03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020162465.10.0zinc finger CCCH domain-containing protein 17
SwissprotQ0DYP50.0C3H17_ORYSJ; Zinc finger CCCH domain-containing protein 17
TrEMBLA0A3B6QJB00.0A0A3B6QJB0_WHEAT; Uncharacterized protein
STRINGTraes_6DL_F4FBB448F.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20263442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.11e-143zinc finger WD40 repeat protein 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]