PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_DD82BD107.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 398aa MW: 43193.5 Da PI: 4.6268 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 56.1 | 8.9e-18 | 133 | 181 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++G+r+++ +g+W+AeIrdps+ r++lg+f +aeeAa+a++ +++++g Traes_6DL_DD82BD107.2 133 FRGIRQRP-WGKWAAEIRDPSK---GVRVWLGTFNSAEEAARAYDVEARRIRG 181 8*******.**********965...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.354 | 132 | 189 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.9E-37 | 132 | 195 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-31 | 132 | 190 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.5E-10 | 133 | 144 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.23E-31 | 133 | 190 | No hit | No description |
Pfam | PF00847 | 1.6E-10 | 133 | 181 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.53E-21 | 133 | 190 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.5E-10 | 155 | 171 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 398 aa Download sequence Send to blast |
MCGGAILKDL KVPAPTRKVT AAVLWPEKNK PKRADGVARR LAGLGRRGGL GLDDGDVDFE 60 ADFEEFEADS GDSDVELGRA GVAGKDGHDV VVEIKPLFAV KRSLSQDDLS TMTTAGFDGP 120 AQRSAKRKRK NEFRGIRQRP WGKWAAEIRD PSKGVRVWLG TFNSAEEAAR AYDVEARRIR 180 GKKAKVNFPE ELTVHQKRRA CPAAPKVPKS SAAQEPTVIP AVNNLANPNA FVYPPADFAS 240 KQPLVQPDNV PYVPAINSAA PVEAPVMNMY SDQGSNSFGC SDLGWEYDTK TPDISSIAPI 300 STIAEGTESA LLQSNTYNPA VIAEGAESAL VQSNTYNSVV PPVMENNAVD FEPWMRFLVD 360 DGVDEPIDSL LNFDVPQDVV GNMDLWSFDD MPICGEIF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-19 | 131 | 189 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-19 | 132 | 189 | 5 | 63 | ATERF1 |
3gcc_A | 2e-19 | 132 | 189 | 5 | 63 | ATERF1 |
5wx9_A | 5e-19 | 132 | 194 | 14 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ711058 | 0.0 | FJ711058.1 Dasypyrum villosum putative ethylene responsive element binding protein (EREBP) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020194339.1 | 0.0 | ethylene-responsive transcription factor 1-like | ||||
Swissprot | Q6K7E6 | 1e-148 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A3B6QMG1 | 0.0 | A0A3B6QMG1_WHEAT; Ethylene response factor | ||||
STRING | Traes_6DL_DD82BD107.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 8e-34 | related to AP2 12 |