PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_DA233B945.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 390aa    MW: 43962 Da    PI: 8.5404
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_DA233B945.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.74.6e-53161431128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                            + pGfrFhPtdeelv +yLk+k+++k+l++ e i+++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+
  Traes_6DL_DA233B945.1  16 MLPGFRFHPTDEELVRFYLKRKIQQKSLPI-ELIRQLDIYKFDPWDLPKLASTGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGT 102
                            579***************************.89***************9888999********************************* PP

                    NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            d++++s+ +++ +glkk+Lvfykgra kg+ktdW+mhe+rl
  Traes_6DL_DA233B945.1 103 DRPIYSSdGSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 143
                            ******966677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.19E-5914175IPR003441NAC domain
PROSITE profilePS5100556.97416175IPR003441NAC domain
PfamPF023651.1E-2518143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MEEIRSDDME KQDEVMLPGF RFHPTDEELV RFYLKRKIQQ KSLPIELIRQ LDIYKFDPWD  60
LPKLASTGEK EWYFYCPRDR KYRNSTRPNR VTGAGFWKAT GTDRPIYSSD GSKCIGLKKS  120
LVFYKGRAAK GVKTDWMMHE FRLPSLTDPS LPQKKPLEKT IPPNDSWAIC RIFKKTNATA  180
QRALSHSWVS PPLPSINGAY IPPHLQTTHR SRHASENTSS AMTNIISSNI QFSSSGYFPS  240
IVSSCQSTLN IIDSISRPAT SIVLPPSDAE HQAMSILSAI PLDLPAGMDI ASMVMNASPI  300
TLSNMDRSAP MNIEFAQPQQ CNNNSNMISR CMVDLPDIGN NINGTQRSIN FPFNNLQVPL  360
SDDWRAAVPW DSLPCTTEAS TNYQPTKCYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-531817717170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPromotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020171862.10.0putative NAC domain-containing protein 94
SwissprotQ9FIW51e-105NAC94_ARATH; Putative NAC domain-containing protein 94
SwissprotQ9ZVH01e-104FEZ_ARATH; Protein FEZ
TrEMBLA0A3B6QK810.0A0A3B6QK81_WHEAT; Uncharacterized protein
TrEMBLA0A453PK570.0A0A453PK57_AEGTS; Uncharacterized protein
STRINGTraes_6DL_DA233B945.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP137172629
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G39820.11e-107NAC domain containing protein 94
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]