PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_D8C9E421C.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 25645.8 Da    PI: 4.9428
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_D8C9E421C.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.41.7e-27959151
                           S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           krie+   rqvtfskRr g++KKAeELSvLCda+va+i+fsstgkl  ++s
  Traes_6DL_D8C9E421C.2  9 KRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSQFAS 59
                           79*********************************************9986 PP
2K-box53.97.8e-19901701898
                  K-box  18 qqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                            + ++a+L++++ +    +R++ Ge+Le Ls+ eLq Le++Le++l ++ ++K++ +leqi+el +k  +l een++Lr+++
  Traes_6DL_D8C9E421C.2  90 HSKYANLNDQLAEASLRLRQMRGEELEGLSVDELQLLEKNLETGLHRVLQTKDQQFLEQINELHRKSSQLAEENMKLRNQV 170
                            345666666666666899************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.623161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-36160IPR002100Transcription factor, MADS-box
CDDcd002651.71E-39275No hitNo description
PRINTSPR004048.2E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.06E-30374IPR002100Transcription factor, MADS-box
PfamPF003191.7E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004048.2E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.57986176IPR002487Transcription factor, K-box
PfamPF014865.9E-1792170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MARERREIKR IESAAARQVT FSKRRRGLFK KAEELSVLCD ADVALIVFSS TGKLSQFASS  60
SMNEIIDKYS THSKNLGKTD QPALDLNLEH SKYANLNDQL AEASLRLRQM RGEELEGLSV  120
DELQLLEKNL ETGLHRVLQT KDQQFLEQIN ELHRKSSQLA EENMKLRNQV GQIPTAGKLV  180
VADTENVVAE DGQSSESVMT ALHSGSSQDN DDGSDVSLKL GFLVDIDVEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-20173173MEF2C
5f28_B4e-20173173MEF2C
5f28_C4e-20173173MEF2C
5f28_D4e-20173173MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. May be required for spikelet (rice flower) development. {ECO:0000269|PubMed:15682279}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5028900.0AM502890.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM22B (WM22B gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020167460.11e-158MADS-box transcription factor 22-like
SwissprotQ9XJ661e-133MAD22_ORYSJ; MADS-box transcription factor 22
TrEMBLA0A453PLP81e-164A0A453PLP8_AEGTS; Uncharacterized protein
STRINGTraes_6DL_D8C9E421C.21e-166(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12213697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.17e-73MIKC_MADS family protein
Publications ? help Back to Top
  1. Lee S,Choi SC,An G
    Rice SVP-group MADS-box proteins, OsMADS22 and OsMADS55, are negative regulators of brassinosteroid responses.
    Plant J., 2008. 54(1): p. 93-105
    [PMID:18182025]
  2. Lee S,Jeong DH,An G
    A possible working mechanism for rice SVP-group MADS-box proteins as negative regulators of brassinosteroid responses.
    Plant Signal Behav, 2008. 3(7): p. 471-4
    [PMID:19704489]
  3. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]