PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_D1C9CE275.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARR-B
Protein Properties Length: 617aa    MW: 66248.1 Da    PI: 6.2401
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_D1C9CE275.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.85e-28154207155
                G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            +pr++W+ eLH++Fv av++L G++kA+Pk+ilelm+v+ Lt+e+v+SHLQkYRl
  Traes_6DL_D1C9CE275.1 154 RPRVVWSVELHRKFVAAVNHL-GIDKAVPKRILELMNVEKLTRENVASHLQKYRL 207
                            59*******************.********************************8 PP
2Response_reg49.91.7e-1767343109
                            H..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
           Response_reg  43 d..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                            +  +Dl++ D+ mp+mdG++ll+     e++lp+i+++ +ge +++ + +  Ga d+l Kp+ +eel++
  Traes_6DL_D1C9CE275.1   6 RdmFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSVNGETKTVMKGITHGACDYLLKPVRIEELRN 73 
                            3469******************87754.558************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001561.00E-17178No hitNo description
PROSITE profilePS5011031.142179IPR001789Signal transduction response regulator, receiver domain
PIRSFPIRSF0363921.3E-1571617IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.8E-26286No hitNo description
SuperFamilySSF521725.55E-22389IPR011006CheY-like superfamily
PfamPF000721.6E-14674IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129411.892151210IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-29152212IPR009057Homeodomain-like
SuperFamilySSF466893.58E-19152211IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-25155207IPR006447Myb domain, plants
PfamPF002492.6E-6156206IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 617 aa     Download sequence    Send to blast
MLRENRDMFD LVISDVHMPD MDGFKLLELV GLEMDLPVIM LSVNGETKTV MKGITHGACD  60
YLLKPVRIEE LRNIWQHVVR RKFSTRDSVN LDTYEECNKP PSADSDYVFG QVTCGSPDQS  120
GRPSKKRKEY HSEEEDEDED SSGQDNDDPS APKRPRVVWS VELHRKFVAA VNHLGIDKAV  180
PKRILELMNV EKLTRENVAS HLQKYRLYLR RLSAVASQQA GIVAALGGRD PFLRMDAFEG  240
LQGYQAFTSP AALSTFSAHG LLNSPRNNQT AVVIQGVATS RSIPTGSSSC TTNPLIGDAA  300
KYHLSLPGNQ HGNLGQGLAT SLGQAQLQQK WMNEGSGDLS TILSGNSRAN GMPRMLPSVT  360
SSPLLPPDLV ECTQAKVAIQ PSVRAPSASV ELLEGAIGAS SGPLESRVSQ QSALPSSGFS  420
ANMLPVHGSF NNNGASFSSN GATRLGDAFS ASFRPTNDLT VARGTKVGAG SFGGTIHLSP  480
DTEQKYLSFG SSDSLLDPKL VWSSSQLPSN IGAHYHSMSQ RSNNCSIDSS HGGRMFGQTS  540
ASASTAAPQT KFDILFSGDT SMARNASESG PQRLQSELSS STCSFDGLLN SMIKVEKDDA  600
AFGDDLGCDF YSLGACI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-25150213164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3758490.0AK375849.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3107L06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020170131.10.0two-component response regulator ORR23-like
SwissprotB8AEH10.0ORR23_ORYSI; Two-component response regulator ORR23
TrEMBLA0A3B6QJN60.0A0A3B6QJN6_WHEAT; Two-component response regulator
TrEMBLA0A453PWK20.0A0A453PWK2_AEGTS; Two-component response regulator
STRINGTraes_6DL_D1C9CE275.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18563894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.13e-81response regulator 12
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]