PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_D1C1DBD34.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MIKC_MADS
Protein Properties Length: 177aa    MW: 20340.4 Da    PI: 10.5562
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_D1C1DBD34.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.58.3e-291059251
                           ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                 SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                           ri+n++nrqvtfskRr g+lKKA+ELS+LCdaev +++fsstg+l+e+ss
  Traes_6DL_D1C1DBD34.1 10 RIDNSTNRQVTFSKRRGGLLKKAKELSILCDAEVGLVVFSSTGRLHEFSS 59
                           8***********************************************96 PP
2K-box78.31.9e-2678169898
                  K-box   8 s.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 
                              +++++ + +q+e+a L+++++ Lq+++++l+Ge+L+sL +++Lq Le++Le sl++i+++K++ll+++ieel +k   +++en++L
  Traes_6DL_D1C1DBD34.1  78 GvNATSEIKLWQREAASLRQQLHDLQESHKQLMGEELSSLGVRDLQGLENRLEMSLRSIKTRKDNLLRSEIEELHRKGSLIHQENTEL 165
                            247788999******************************************************************************9 PP

                  K-box  95 rkkl 98 
                             ++l
  Traes_6DL_D1C1DBD34.1 166 CRRL 169
                            8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.4E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.903161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-32284IPR002100Transcription factor, MADS-box
CDDcd002653.52E-42276No hitNo description
PRINTSPR004041.0E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.3E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-2583169IPR002487Transcription factor, K-box
PROSITE profilePS5129714.64185177IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010440Biological Processstomatal lineage progression
GO:0048574Biological Processlong-day photoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MGRGKIVIRR IDNSTNRQVT FSKRRGGLLK KAKELSILCD AEVGLVVFSS TGRLHEFSST  60
NMKAVIDRYT KAKEEQPGVN ATSEIKLWQR EAASLRQQLH DLQESHKQLM GEELSSLGVR  120
DLQGLENRLE MSLRSIKTRK DNLLRSEIEE LHRKGSLIHQ ENTELCRRLN IMSQQKM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-23174174MEF2C
5f28_B8e-23174174MEF2C
5f28_C8e-23174174MEF2C
5f28_D8e-23174174MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional factor that targets the CArG motif 5'-C(A/T)TTAAAAAG-3' in the promoter of D14. Directly suppresses D14 expression to control the outgrowth of axillary buds. {ECO:0000269|PubMed:23463009}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00410DAPTransfer from AT3G57230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM5029050.0AM502905.1 Triticum aestivum mRNA for MIKC-type MADS-box transcription factor WM32B (WM32B gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020180450.11e-125MADS-box transcription factor 57-like
RefseqXP_020180451.11e-125MADS-box transcription factor 57-like
SwissprotQ6Z6W21e-107MAD57_ORYSJ; MADS-box transcription factor 57
TrEMBLA0A453PHG91e-124A0A453PHG9_AEGTS; Uncharacterized protein
STRINGTraes_6DL_D1C1DBD34.11e-125(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61435130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.14e-80AGAMOUS-like 16
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Guo S, et al.
    The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14.
    Nat Commun, 2013. 4: p. 1566
    [PMID:23463009]
  3. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  4. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]
  5. Wang H, et al.
    A Signaling Cascade from miR444 to RDR1 in Rice Antiviral RNA Silencing Pathway.
    Plant Physiol., 2016. 170(4): p. 2365-77
    [PMID:26858364]