PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_BA85EE462.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | GeBP | ||||||||
Protein Properties | Length: 92aa MW: 10590.4 Da PI: 11.5272 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 57.5 | 3.8e-18 | 27 | 91 | 34 | 97 |
DUF573 34 idafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskkiWg 97 + fye +++++sf++ k+ql+eK+rrLKkK++ + ++ a++g ++f++ h+ i+++ + iW+ Traes_6DL_BA85EE462.1 27 TGPFYEEIRRKLSFDFYKNQLIEKLRRLKKKYRVCATRmAAQGAAFAFKSVHEGAIYDVVRHIWR 91 678**********************************9889***********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 8.2E-17 | 27 | 90 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
DGRGGAAHPA RVPRVHVALG LRLRVATGPF YEEIRRKLSF DFYKNQLIEK LRRLKKKYRV 60 CATRMAAQGA AFAFKSVHEG AIYDVVRHIW RP |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK373813 | 4e-98 | AK373813.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3044F12. | |||
GenBank | AK376405 | 4e-98 | AK376405.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3123A01. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020186498.1 | 1e-36 | probable transcription factor At3g04930 | ||||
TrEMBL | A0A287R733 | 8e-37 | A0A287R733_HORVV; Uncharacterized protein | ||||
STRING | Traes_6DL_BA85EE462.1 | 3e-61 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP974 | 37 | 123 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28040.1 | 4e-19 | DNA-binding storekeeper protein-related transcriptional regulator |
Publications ? help Back to Top | |||
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