PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_A014E9069.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 364aa MW: 40518.3 Da PI: 11.9712 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.5 | 2e-15 | 72 | 119 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++eEd++l d++ ++G g+W++ +++ g+ R +k+c++rw +yl Traes_6DL_A014E9069.1 72 KGLWSPEEDQKLRDYILRHGHGCWSALPAKAGLQRNGKSCRLRWINYL 119 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.3 | 6.3e-17 | 126 | 170 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g +++eE+e +++ lG++ W++Iar+++ gRt++++k++w++yl Traes_6DL_A014E9069.1 126 GMFSPEEEETVMSLHAALGNK-WSRIARHLP-GRTDNEVKNYWNSYL 170 569******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.819 | 67 | 119 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.52E-28 | 69 | 166 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.3E-11 | 71 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-13 | 72 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-21 | 73 | 126 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.30E-10 | 75 | 119 | No hit | No description |
PROSITE profile | PS51294 | 25.123 | 120 | 174 | IPR017930 | Myb domain |
SMART | SM00717 | 6.3E-14 | 124 | 172 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.4E-15 | 126 | 170 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-25 | 127 | 173 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.14E-11 | 128 | 170 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MAIKLPPTAP LWKRQNAPPS PSQGLNPKPL PPPLPPVDLS EVSCRAAPVV RLQASKAMGC 60 KACDKPRPSY RKGLWSPEED QKLRDYILRH GHGCWSALPA KAGLQRNGKS CRLRWINYLR 120 PGLKHGMFSP EEEETVMSLH AALGNKWSRI ARHLPGRTDN EVKNYWNSYL KKRVEGGKEA 180 PGSPAPXXXX XXXXRVPEPE PRGSQYGAGT GRPAVELRLV GAAARVVVGR LELSDRDRAS 240 RLQGPRARDS QGDVRRLAQH GLHRWPGGGG GTWPGSRGGG WCRRRRSSSG DEPGVRAGRW 300 ATWRGGSPAR RLRRQRHLLG VPGAVRQHGS DAGRRRVLRP ALHDRVLRPQ LEHRQGIRRN 360 YRVS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 1e-23 | 68 | 175 | 3 | 109 | B-MYB |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT038744 | 1e-145 | BT038744.1 Zea mays full-length cDNA clone ZM_BFb0323B03 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
STRING | Traes_6DL_A014E9069.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G25560.1 | 1e-55 | myb domain protein 18 |
Publications ? help Back to Top | |||
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