PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_90C72AE92.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family E2F/DP
Protein Properties Length: 384aa    MW: 42611.3 Da    PI: 7.3404
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_90C72AE92.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP56.16.3e-1850108871
                E2F_TDP   8 lltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkekneirwkg 71 
                             l+ +f++l+ +   + + l++++++L    v  +rRRiYDi+NVLe+++++++k+kn+++w+g
  Traes_6DL_90C72AE92.1  50 CLCCSFVALYDRDGVESIGLDDASRRL---GV--ERRRIYDIVNVLESVGILARKAKNRYSWIG 108
                            58999*******999************...**..****************************98 PP
2E2F_TDP79.62.8e-25187267171
                E2F_TDP   1 rkeksLrlltqkflklleksee.givtlnevakeLvse.....dvknkrRRiYDilNVLealnliek....kekneirwkg 71 
                            rkeksL+lltq+f+kl+ + e+  +++l+e+ak L+ e     ++++k+RR+YDi+NVL++l+liek    ++k+++rw g
  Traes_6DL_90C72AE92.1 187 RKEKSLGLLTQNFVKLFLTMEQvSTISLDEAAKFLLGEgheesNMRTKVRRLYDIANVLSSLKLIEKtqvdTRKPAFRWLG 267
                            79*****************9999**********************************************999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM013721.2E-1647108IPR003316E2F/DP family, winged-helix DNA-binding domain
Gene3DG3DSA:1.10.10.101.7E-1950109IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023196.1E-1650108IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467851.19E-1251107IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.108.6E-22184268IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013722.7E-30187267IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023192.8E-20188267IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.05E-13189268IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
RGREATPPRL QPQAEVARPA LLQVSAIHLS FASYYPPEIC VFLTQFSGAC LCCSFVALYD  60
RDGVESIGLD DASRRLGVER RRIYDIVNVL ESVGILARKA KNRYSWIGFG GVPMALRELK  120
ERALREKSGL APLPVEELSA ANMSDDEDDD KLGDPEAETE GDKLSQTVDN PSDMPDAPPC  180
RLRSDHRKEK SLGLLTQNFV KLFLTMEQVS TISLDEAAKF LLGEGHEESN MRTKVRRLYD  240
IANVLSSLKL IEKTQVDTRK PAFRWLGMAG KPKAENGVTV VASPARKTLS NKRVFGTELT  300
NIGINRSQLE PTIQKKAKLA QGGADILKSY NVAAQKQPGQ VNKSGFVYGP FHPSCARKQE  360
PDDCNNWESL ADSFRPQYQN PDDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yo2_A5e-31472618232Transcription factor E2F8
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020187635.10.0E2F transcription factor-like E2FE isoform X1
TrEMBLA0A453PLG80.0A0A453PLG8_AEGTS; Uncharacterized protein
STRINGTraes_6DL_90C72AE92.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31853884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48160.13e-84DP-E2F-like 1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]