PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Traes_6DL_9097A97D9.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 108aa MW: 12312.1 Da PI: 7.7537 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 57.2 | 5.5e-18 | 19 | 98 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn Y+ e+GF vr s+s+ + +++ +++ vC + gk+ +e++k + r+gC+a++++ + +d+ w++++ +++HnH+l+ Traes_6DL_9097A97D9.1 19 EFYNLYSWECGFGVRLSSSRMN-VDRKRCMQEIVCACAGKPLKENTK---------SARCGCTAMIRLLRASDNGWYISEHKEDHNHPLS 98 6****************99998.66668899*********9997655.........9*******************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.3E-14 | 19 | 98 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 108 aa Download sequence Send to blast |
MVVNPTVGAS FDSIDEAYEF YNLYSWECGF GVRLSSSRMN VDRKRCMQEI VCACAGKPLK 60 ENTKSARCGC TAMIRLLRAS DNGWYISEHK EDHNHPLSLT CGEKMHWK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020184225.1 | 6e-75 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A446X4Y4 | 1e-64 | A0A446X4Y4_TRITD; Uncharacterized protein | ||||
STRING | Traes_6DL_9097A97D9.1 | 2e-77 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP619 | 19 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80010.1 | 4e-16 | FAR1-related sequence 8 |
Publications ? help Back to Top | |||
---|---|---|---|
|