PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_8ECBBC867.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | Nin-like | ||||||||
Protein Properties | Length: 205aa MW: 23778.8 Da PI: 9.2985 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 80.3 | 2e-25 | 96 | 143 | 5 | 52 |
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +s++++s++F +pik+AA +L+v+lT+LKr+CR++GI+RWPhRk+ksl Traes_6DL_8ECBBC867.1 96 LSFQQVSRCFCMPIKQAAEKLNVGLTLLKRQCRELGIPRWPHRKLKSL 143 89********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.824 | 80 | 164 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 7.1E-21 | 96 | 143 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MYLLRQWSFE YLLEISLFYP TQHLCDTSTS STTTTTSQSC LLQDQQELEA RLEVHIMSLL 60 AALEGEHHGG EKVMKGEVGR DAGEKKRNGP EEKPLLSFQQ VSRCFCMPIK QAAEKLNVGL 120 TLLKRQCREL GIPRWPHRKL KSLETLIKNA QELGKPMIEV EMLRRKKKLI EERPGHIELD 180 EVTKVLRQAC FKEKFKRRRL MAMEG |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 162 | 168 | LRRKKKL |
2 | 163 | 168 | RRKKKL |
3 | 195 | 199 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014756209.2 | 2e-61 | protein RKD1 | ||||
Swissprot | Q9FGD1 | 8e-29 | RKD3_ARATH; Protein RKD3 | ||||
TrEMBL | A0A3B6QL42 | 1e-148 | A0A3B6QL42_WHEAT; Uncharacterized protein | ||||
TrEMBL | A0A453PK91 | 1e-148 | A0A453PK91_AEGTS; Uncharacterized protein | ||||
STRING | Traes_6DL_8ECBBC867.1 | 1e-149 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4590 | 33 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 7e-31 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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