PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_8ECBBC867.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family Nin-like
Protein Properties Length: 205aa    MW: 23778.8 Da    PI: 9.2985
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_8ECBBC867.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK80.32e-2596143552
                 RWP-RK   5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                            +s++++s++F +pik+AA +L+v+lT+LKr+CR++GI+RWPhRk+ksl
  Traes_6DL_8ECBBC867.1  96 LSFQQVSRCFCMPIKQAAEKLNVGLTLLKRQCRELGIPRWPHRKLKSL 143
                            89********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.82480164IPR003035RWP-RK domain
PfamPF020427.1E-2196143IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MYLLRQWSFE YLLEISLFYP TQHLCDTSTS STTTTTSQSC LLQDQQELEA RLEVHIMSLL  60
AALEGEHHGG EKVMKGEVGR DAGEKKRNGP EEKPLLSFQQ VSRCFCMPIK QAAEKLNVGL  120
TLLKRQCREL GIPRWPHRKL KSLETLIKNA QELGKPMIEV EMLRRKKKLI EERPGHIELD  180
EVTKVLRQAC FKEKFKRRRL MAMEG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162168LRRKKKL
2163168RRKKKL
3195199KRRRL
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014756209.22e-61protein RKD1
SwissprotQ9FGD18e-29RKD3_ARATH; Protein RKD3
TrEMBLA0A3B6QL421e-148A0A3B6QL42_WHEAT; Uncharacterized protein
TrEMBLA0A453PK911e-148A0A453PK91_AEGTS; Uncharacterized protein
STRINGTraes_6DL_8ECBBC867.11e-149(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45903365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66990.17e-31RWP-RK domain-containing protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Tedeschi F,Rizzo P,Rutten T,Altschmied L,Bäumlein H
    RWP-RK domain-containing transcription factors control cell differentiation during female gametophyte development in Arabidopsis.
    New Phytol., 2017. 213(4): p. 1909-1924
    [PMID:27870062]