PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_8D95F127B.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 685aa    MW: 75009.3 Da    PI: 6.7023
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_8D95F127B.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.4e-201772156
                           TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                           +++ +++t+ q+++Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k
  Traes_6DL_8D95F127B.1 17 KKRYHRHTPRQIQQLEAMFKECPHPDENQRLHLSRELGLEPRQIKFWFQNRRTQMK 72
                           678899***********************************************998 PP
2START163.91.2e-512104342206
                            HHHHHHHHHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS........SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S.. CS
                  START   2 laeeaaqelvkkalaeepgWvkss...esengdevlqkfeeskv.......dsgealrasgvvdmvlallveellddkeqWdetla.. 77 
                            +a +a++e++++a+a+e +Wvk +   e +n d++ ++f++ ++        ++e +r+s +v   +  lv +++d++ +W+e ++  
  Traes_6DL_8D95F127B.1 210 MATRAMDEFIRLAQAGEHLWVKAAggrEVLNVDTYDSIFAKPGSssfrgpdVHVEGSRDSCLVLTSAIALVDTFMDSS-KWTEFFPti 296
                            5789***********************99999999999987766899*******************************.********* PP

                            ..EEEEEEEECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEE CS
                  START  78 ..kaetlevissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepk 157
                              +a t++v+ +g     + l+lm+ el ++sp+vp R+f f+Ry+rq ++g w+i+dvSvd +++    ++ +R+++lpSg+li ++
  Traes_6DL_8D95F127B.1 297 vtRARTIDVLVNGmagrsESLVLMYEELHVMSPVVPtREFCFLRYCRQIEQGLWAIADVSVDLQRDARYGAPPARSRRLPSGCLIADM 384
                            ******************************************************************988******************* PP

                            CTCEEEEEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                  START 158 snghskvtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqcek 206
                            sng+skvtwveh++ ++++p  +l+r lv sg+a+ga +w+a+lqr ce+
  Traes_6DL_8D95F127B.1 385 SNGYSKVTWVEHMETEDKTPiNQLYRDLVLSGAAFGAHRWLAALQRACER 434
                            ************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.13E-20774IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.1E-221279IPR009057Homeodomain-like
PROSITE profilePS5007117.6531474IPR001356Homeobox domain
SMARTSM003891.3E-191578IPR001356Homeobox domain
CDDcd000863.29E-191675No hitNo description
PfamPF000466.5E-181772IPR001356Homeobox domain
PROSITE patternPS0002704972IPR017970Homeobox, conserved site
PROSITE profilePS5084847.514200437IPR002913START domain
SuperFamilySSF559611.13E-32201435No hitNo description
CDDcd088756.14E-107204433No hitNo description
SMARTSM002345.2E-41209434IPR002913START domain
PfamPF018525.8E-44210434IPR002913START domain
Gene3DG3DSA:3.30.530.203.4E-5317400IPR023393START-like domain
SuperFamilySSF559611.45E-17452676No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 685 aa     Download sequence    Send to blast
MDFGDDLVPG SEAHRRKKRY HRHTPRQIQQ LEAMFKECPH PDENQRLHLS RELGLEPRQI  60
KFWFQNRRTQ MKAQHERADN CFLRAENDKI RCENIAMREA LKNVICPTCG GPHSGADDYF  120
DEHKLRMENA HLKEELDRVS SLTSKYLGRP ITQLPSMQPL SMSSLELSVG GLGSPVALGP  180
ALDLDPLGGS SPFQLPAPVS EMERPMMAEM ATRAMDEFIR LAQAGEHLWV KAAGGREVLN  240
VDTYDSIFAK PGSSSFRGPD VHVEGSRDSC LVLTSAIALV DTFMDSSKWT EFFPTIVTRA  300
RTIDVLVNGM AGRSESLVLM YEELHVMSPV VPTREFCFLR YCRQIEQGLW AIADVSVDLQ  360
RDARYGAPPA RSRRLPSGCL IADMSNGYSK VTWVEHMETE DKTPINQLYR DLVLSGAAFG  420
AHRWLAALQR ACERHACLVT PPHRDIAGVT LEGKRSMMRL SQRMVGSFCA SLSASQQHRW  480
TTLSGPGAGV DDAAGVRVMV HRSTDPGQPS GVVLSAATSI WLPVSCDRVF AFVSDENTRS  540
QWDVLSHGNP VQEVSRIPNG SHPGNSISLL RGLNASQNSM LILQESCADA SGSLVVYAPI  600
DLPAANVVMS GEDPSAIPLL PSGFTILPDG RASSSTGSVV TVAFQILVSS LPSSRLNAES  660
VATVNSLIGT TVEQIKAALN CGSSH
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3766540.0AK376654.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3130F06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186741.10.0homeobox-leucine zipper protein ROC8-like
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A3B6QIQ20.0A0A3B6QIQ2_WHEAT; Uncharacterized protein
STRINGTraes_6DL_8D95F127B.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.10.0homeodomain GLABROUS 12
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]