PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_8A1342D56.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family NAC
Protein Properties Length: 312aa    MW: 34228.1 Da    PI: 6.6961
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_8A1342D56.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.91.4e-47101481128
                    NAM   1 lppGfrFhPtdeelvveyLkkkvegkklel..eevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                            lppGfrF P+deelv++yL+ kv++++++   + ++ evd++ +ePw+Lp  +k +++ewyfFs rd+kyatg r+n at+sgyWkat
  Traes_6DL_8A1342D56.1  10 LPPGFRFYPSDEELVCHYLHGKVANQRFTGgaTGTMIEVDLHVHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNCATRSGYWKAT 97 
                            79*************************6651134699*************87788999****************************** PP

                    NAM  87 gkdkevlsk.....kgel......vglkktLvfykgrapkgektdWvmheyrl 128
                            gkd+ + s      +         vg++ktLvfy+grap+g+kt Wvmhe+r+
  Traes_6DL_8A1342D56.1  98 GKDRVIRSPrssssS--SsgratiVGMRKTLVFYRGRAPNGSKTCWVMHEFRI 148
                            *******99665550..0555566***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-567167IPR003441NAC domain
PROSITE profilePS5100553.96710167IPR003441NAC domain
PfamPF023651.9E-2611148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MGLRDIEMTL PPGFRFYPSD EELVCHYLHG KVANQRFTGG ATGTMIEVDL HVHEPWELPD  60
VAKLSTNEWY FFSFRDRKYA TGLRTNCATR SGYWKATGKD RVIRSPRSSS SSSSGRATIV  120
GMRKTLVFYR GRAPNGSKTC WVMHEFRIEN PHSPPKEDWV LCRVFDQKKA DTEYAVDGKQ  180
ELGGGGVAQK AAAVSGSNYV SSSSCYDPDR YQHSPSAPFP SLGAGGHHYQ ITSCDHHHPD  240
GAAGVSLSNV DAFAGMPQLL SYETILDFSQ QLLGGGSAAA GLRDGADDQC GGALMDLGLQ  300
VQEEHYNYNS LM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-4611684166NO APICAL MERISTEM PROTEIN
1ut4_B6e-4611684166NO APICAL MERISTEM PROTEIN
1ut7_A6e-4611684166NO APICAL MERISTEM PROTEIN
1ut7_B6e-4611684166NO APICAL MERISTEM PROTEIN
3swm_A5e-4611687169NAC domain-containing protein 19
3swm_B5e-4611687169NAC domain-containing protein 19
3swm_C5e-4611687169NAC domain-containing protein 19
3swm_D5e-4611687169NAC domain-containing protein 19
3swp_A5e-4611687169NAC domain-containing protein 19
3swp_B5e-4611687169NAC domain-containing protein 19
3swp_C5e-4611687169NAC domain-containing protein 19
3swp_D5e-4611687169NAC domain-containing protein 19
4dul_A6e-4611684166NAC domain-containing protein 19
4dul_B6e-4611684166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3640020.0AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173052.10.0NAC domain-containing protein 76-like
SwissprotQ9FLJ23e-59NC100_ARATH; NAC domain-containing protein 100
TrEMBLA0A3B6QKH90.0A0A3B6QKH9_WHEAT; Uncharacterized protein
STRINGTraes_6DL_8A1342D56.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69738166
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.11e-74NAC domain containing protein 74
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]