PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_882BC1812.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family bHLH
Protein Properties Length: 247aa    MW: 26577.1 Da    PI: 6.3029
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_882BC1812.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.34.9e-12250455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                           +h ++Er+RR+++N+ +  Lr+l+P++   + ++ + a+i+  A++++k+L+
  Traes_6DL_882BC1812.1  2 THIAVERNRRRQMNEYLVVLRSLMPES---YVQRGDQASIVGGAIDFVKELE 50
                           8**************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.48E-13154No hitNo description
PROSITE profilePS5088814.513149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-16169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.0E-14269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.7E-11455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MTHIAVERNR RRQMNEYLVV LRSLMPESYV QRGDQASIVG GAIDFVKELE QQLQSLEAQK  60
RALAHQQQHK AGRDAAPLPT AMPARASTSG GIGNACVEST SNCSSSVTEA DGAPDAPPFA  120
GFFTYPQYVW RQSPRDATTL SADESRAGVA DIEVTLVETH ASLRVMAPRR PGQLLRMVAG  180
LQALRLTVLH LNVTALDSLA LYSLSLKVEE GCGLTTADDI AAAVHHVLCF IHAEAEAAPQ  240
QLLAPAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3575790.0AK357579.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1057A06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020189025.11e-180transcription factor bHLH94-like
SwissprotQ9C7T44e-65BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A453PB111e-179A0A453PB11_AEGTS; Uncharacterized protein
STRINGTraes_6DL_882BC1812.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37123678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]