PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_865644EC4.2
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 881aa    MW: 91249.2 Da    PI: 10.3931
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_865644EC4.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.94.9e-08135179244
                            SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHH CS
        Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrw 44 
                            ++WT++Ed  l  +v++ G g+W  I r+ +   +Rt  q+  rw
  Traes_6DL_865644EC4.2 135 KAWTKDEDAELMAGVHKCGEGNWLDILRKYNfdSTRTYGQLSQRW 179
                            68*******************************99**99999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.9E-11128186IPR009057Homeodomain-like
PROSITE profilePS5129415.508129187IPR017930Myb domain
SuperFamilySSF466892.87E-11132185IPR009057Homeodomain-like
SMARTSM007178.7E-7133185IPR001005SANT/Myb domain
PfamPF002491.1E-6135179IPR001005SANT/Myb domain
CDDcd116601.59E-12140184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 881 aa     Download sequence    Send to blast
MLWRYIAYGY DFVENVEDGS PQPLGDESDL ECEIEPSPKP SNEAAAEASR FAKILMYGPS  60
REQGSSHRAN SDVPLLNTPN EKIPRVSSDK QLAQSHRLTN GTGPVSNSKQ APHTGLSPDS  120
FDGNGPHNKK TKKTKAWTKD EDAELMAGVH KCGEGNWLDI LRKYNFDSTR TYGQLSQRWA  180
VISKRQATTK PAKAKPVTGG YDMKATQKAF FMALDMPMGK PGGLSTLRSG ASQQSTQHPA  240
PVFGAAAPEL KSATSSSSFS LPVPVVPSAA PGPVSAQVQV QPRVQQAPSQ AAPSKVSNAS  300
IKSRNSSKKQ TAQANLTNAP SSIQAAAIAA GGRIATASIA TNLLKAAQSP QAVHIRSRGK  360
GSSKTSTSSK ASTVAGEPGT QTGSAQHSEL PNSSAPIPSP TVLITQSTEQ VNVVPEVAGV  420
NPPEQSASAH LLEPDRALST TPVPGPCDNM EIDDDSTFCV VTMEDLFPED VKQPETVSQP  480
ETVRLPEMVR QPETVRQTET VSQPETVRQP EMVRQPETVR QPEMVKQPEM VDPKAEEMID  540
PKDADMLEFD RFVAQGCLTT DYSDKSKGVK IAPGAQGATA SQKKKQLPTV GKSIPVFRAP  600
VTMKKTKALP SHGATLASTV ASSGLVGTGN AGVLSKAIYR KPAGPGTTGK QNRCQEIMAQ  660
KQHAMNSNSS AMARNAAPGT GTPARNVAAG VGAPARNAAP ATGTPAKSVA PATGTPPVRN  720
TAPATGTPPV RNTAPGTGTP PVRNTAPATG TPPVRNTAPS TGTPPVRNTA PGTGTPPVRN  780
TAPGTGTPPV RNTAPGTGTP AVRNTAPGTG TPARNSLTGT GTPQARNSLT GTGTPAARNV  840
APVTGAPPAR NLLTGTGTPP AIRQHNPAVN GASKGNPPAS Q
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3708180.0AK370818.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv2117I01.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020186656.10.0mucin-5AC-like isoform X1
TrEMBLA0A3B6NVC30.0A0A3B6NVC3_WHEAT; Uncharacterized protein
STRINGTraes_6DL_865644EC4.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP46843754
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.17e-22MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]