PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_7E6CE0C8E.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | DBB | ||||||||
Protein Properties | Length: 116aa MW: 12244.2 Da PI: 6.4688 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 22.9 | 1.8e-07 | 4 | 46 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ ++ ++ C ++ lC+ C +e+H H++ p Traes_6DL_7E6CE0C8E.1 4 QCDSCGVAAATVVCCADEAALCARCDVEIHAAnklaskHQRLP 46 7*****999*********************6678888898877 PP | |||||||
2 | zf-B_box | 29.1 | 2e-09 | 53 | 85 | 2 | 34 |
zf-B_box 2 eerkCpeHeekelqlfCedCqqllCedClleeH 34 + ++C+ ++ek + +fC +++ l+C+dC + +H Traes_6DL_7E6CE0C8E.1 53 KLPRCDICQEKAAFIFCVEDRALFCRDCDEPIH 85 5789**************************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.926 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 6.23E-5 | 3 | 47 | No hit | No description |
Pfam | PF00643 | 1.4E-5 | 4 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.5E-9 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.731 | 52 | 99 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.8E-14 | 52 | 99 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.2E-7 | 53 | 95 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.03E-6 | 55 | 85 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
MKIQCDSCGV AAATVVCCAD EAALCARCDV EIHAANKLAS KHQRLPLDAL GAKLPRCDIC 60 QEKAAFIFCV EDRALFCRDC DEPIHVPGTL SGNHQRYLAT GIRVGLGPVS ACAAGD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation (PubMed:17605755, PubMed:18540109, PubMed:21685177). BBX24/STO and BBX25/STH function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX24/STO acts additively with BBX25/STH during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). Functions as negative regulator of photomorphogenic UV-B responses by interacting with both COP1 and HY5 (PubMed:22410790). May act as a transcription factor in the salt-stress response (PubMed:12909688). {ECO:0000269|PubMed:12909688, ECO:0000269|PubMed:17605755, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:21685177, ECO:0000269|PubMed:22410790, ECO:0000269|PubMed:23624715}. | |||||
UniProt | Acts as negative regulator of seedling photomorphogenesis (PubMed:18540109). BBX25/STH and BBX24/STO function as transcriptional corepressors of HY5 activity, leading to the down-regulation of BBX22 expression. BBX25/STH acts additively with BBX24/STO during de-etiolation and the hypocotyl shade avoidance response (PubMed:23624715). {ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:23624715}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak before dawn. {ECO:0000269|PubMed:17605755}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT009289 | 0.0 | BT009289.1 Triticum aestivum clone wlm0.pk0023.h3:fis, full insert mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020173021.1 | 2e-78 | B-box zinc finger protein 25-like | ||||
Swissprot | Q96288 | 1e-54 | BBX24_ARATH; B-box zinc finger protein 24 | ||||
Swissprot | Q9SID1 | 8e-55 | BBX25_ARATH; B-box zinc finger protein 25 | ||||
TrEMBL | A0A3B6NQU0 | 3e-77 | A0A3B6NQU0_WHEAT; Uncharacterized protein | ||||
STRING | MLOC_39632.1 | 6e-76 | (Hordeum vulgare) | ||||
STRING | Traes_6DL_7E6CE0C8E.1 | 2e-78 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3202 | 33 | 68 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06040.2 | 2e-46 | DBB family protein |