PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_7B2EC9B84.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 19632.1 Da PI: 9.1217 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.6 | 1.7e-19 | 108 | 159 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56 s+++GVr+++ +g+W+AeIrdp + r +lg+f+ta +Aa+a++ a+++++g+ Traes_6DL_7B2EC9B84.1 108 SKFRGVRQRS-WGKWAAEIRDP-----HraVRKWLGTFDTAVDAARAYDLAALEFRGH 159 79*****999.**********7.....338**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 4.5E-12 | 108 | 159 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.18E-22 | 108 | 167 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.40E-29 | 108 | 168 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.7E-30 | 109 | 167 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-32 | 109 | 172 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.512 | 109 | 166 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-12 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-12 | 148 | 168 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MAPRLERGGS GFQLPNSELE DSLFLRALIS VVNGDAVVPT LHLEPSSTPH FAAAVPACAS 60 CGVDGCIGCM FAAAAAPAGS SSEGEGCSAA SFVKGGGVGK ITRRRSRSKF RGVRQRSWGK 120 WAAEIRDPHR AVRKWLGTFD TAVDAARAYD LAALEFRGHR ARLNFPDAAA TPPSSASVSD 180 SSWAAAQS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-18 | 110 | 166 | 6 | 63 | ATERF1 |
3gcc_A | 3e-18 | 110 | 166 | 6 | 63 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK371943 | 0.0 | AK371943.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2143L06. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020193074.1 | 1e-132 | ethylene-responsive transcription factor ERF109-like | ||||
TrEMBL | A0A3B6QII3 | 1e-131 | A0A3B6QII3_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6DL_7B2EC9B84.1 | 1e-132 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1242 | 36 | 124 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33710.1 | 3e-16 | ERF family protein |
Publications ? help Back to Top | |||
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