PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_7892214C8.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ERF
Protein Properties Length: 129aa    MW: 14371 Da    PI: 9.9541
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_7892214C8.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.59e-151421256
                    AP2 12 rgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkklege 56
                           +g+W+AeIrdp     +   r +lg+f+ta eAa+a++ a+++++g+
  Traes_6DL_7892214C8.1  1 WGKWAAEIRDP-----HraVRKWLGTFDTAAEAARAYDVAALEFRGH 42
                           9*********7.....338**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003806.5E-22155IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.8E-24149IPR001471AP2/ERF domain
PROSITE profilePS5103220.31149IPR001471AP2/ERF domain
PfamPF008471.5E-8142IPR001471AP2/ERF domain
SuperFamilySSF541712.88E-17150IPR016177DNA-binding domain
CDDcd000182.54E-22149No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
WGKWAAEIRD PHRAVRKWLG TFDTAAEAAR AYDVAALEFR GHRAKLNFPA GATSASASAS  60
SWAAAQPRPQ RQQRPESPRE KCGSNASSPV HVPRLPEQGR PVAREQEIWD GLHEIMMMDD  120
GNFWSNPKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-141551469ATERF1
3gcc_A9e-141551469ATERF1
5wx9_A1e-131492372Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3748263e-75AK374826.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3077G12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193084.12e-90ethylene-responsive transcription factor ERF109-like
TrEMBLA0A3B6QIA85e-88A0A3B6QIA8_WHEAT; Uncharacterized protein
TrEMBLA0A453PMV35e-88A0A453PMV3_AEGTS; Uncharacterized protein
STRINGTraes_6DL_7892214C8.17e-90(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124236124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.13e-17ERF family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]