PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_6DL_6FAD063EE.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family CO-like
Protein Properties Length: 392aa    MW: 43027.9 Da    PI: 4.5643
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_6DL_6FAD063EE.2genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.91.6e-06637536
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                            C+ ++e++ +++C+++   lC +C  + H+ 
  Traes_6DL_6FAD063EE.2  6 LCDFCGEQRPTIYCRSDAASLCLSCDHNVHSA 37
                           7***************************9965 PP

2zf-B_box23.11.5e-074980536
               zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
                            C+++ ++++   C + ++ lC++C  ++H  
  Traes_6DL_6FAD063EE.2 49 LCDRCASQPAAVRCLEENTSLCQNCDWNGHAA 80
                           7***************************9955 PP

3CCT621.8e-21335378144
                    CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                            R  al+RY eK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ 
  Traes_6DL_6FAD063EE.2 335 RGSALSRYMEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 378
                            6789*************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.3E-10249IPR000315B-box-type zinc finger
PROSITE profilePS501199.456249IPR000315B-box-type zinc finger
CDDcd000214.12E-5637No hitNo description
PROSITE profilePS501198.8454592IPR000315B-box-type zinc finger
CDDcd000211.23E-44980No hitNo description
SMARTSM003360.255092IPR000315B-box-type zinc finger
PROSITE profilePS5101714.932335377IPR010402CCT domain
PfamPF062032.1E-16335377IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005886Cellular Componentplasma membrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MIMDALCDFC GEQRPTIYCR SDAASLCLSC DHNVHSANTL SQRHMRTLLC DRCASQPAAV  60
RCLEENTSLC QNCDWNGHAA TSLAAGHLRQ TINCYSGCPS SEELARIWSF DFDAPSAATE  120
PNCEEGISMM SINDSGVSNH CGVQQDCSLL DIANTSLMSD PPTVEKLKSE DEMNLRPLPT  180
HQPAQSVSMA PKVPSVTDDD MFNDGRVYEN FCVDDNDLTF ENYEELFGTP HVQTEQLFDD  240
AGIDSFFEMK EMPAADCDQQ LTPVQPECSN AVSADSGLCV PARQAISTIS LSFSGLAGES  300
NAGDHQDCGV SPLLLMGEQP WLPPGSEVSS AGGSRGSALS RYMEKKKRRK FDKKIRYASR  360
KARADVRKRV KGRFVKAGEA YDYDPLNDTR SY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1344348KKKRR
2344349KKKRRK
3345349KKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2526660.0AK252666.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf169b05, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020173272.10.0zinc finger protein CONSTANS-LIKE 10-like isoform X1
SwissprotQ9LUA91e-115COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A3B6QJL20.0A0A3B6QJL2_WHEAT; Uncharacterized protein
STRINGTraes_6DL_6FAD063EE.20.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20793788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.13e-91B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]