PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_6DL_6FAD063EE.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | CO-like | ||||||||
Protein Properties | Length: 392aa MW: 43027.9 Da PI: 4.5643 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.9 | 1.6e-06 | 6 | 37 | 5 | 36 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+ ++e++ +++C+++ lC +C + H+ Traes_6DL_6FAD063EE.2 6 LCDFCGEQRPTIYCRSDAASLCLSCDHNVHSA 37 7***************************9965 PP | |||||||
2 | zf-B_box | 23.1 | 1.5e-07 | 49 | 80 | 5 | 36 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg 36 C+++ ++++ C + ++ lC++C ++H Traes_6DL_6FAD063EE.2 49 LCDRCASQPAAVRCLEENTSLCQNCDWNGHAA 80 7***************************9955 PP | |||||||
3 | CCT | 62 | 1.8e-21 | 335 | 378 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R al+RY eK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk+ Traes_6DL_6FAD063EE.2 335 RGSALSRYMEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKAG 378 6789*************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.3E-10 | 2 | 49 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.456 | 2 | 49 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.12E-5 | 6 | 37 | No hit | No description |
PROSITE profile | PS50119 | 8.845 | 45 | 92 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.23E-4 | 49 | 80 | No hit | No description |
SMART | SM00336 | 0.25 | 50 | 92 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 14.932 | 335 | 377 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.1E-16 | 335 | 377 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 392 aa Download sequence Send to blast |
MIMDALCDFC GEQRPTIYCR SDAASLCLSC DHNVHSANTL SQRHMRTLLC DRCASQPAAV 60 RCLEENTSLC QNCDWNGHAA TSLAAGHLRQ TINCYSGCPS SEELARIWSF DFDAPSAATE 120 PNCEEGISMM SINDSGVSNH CGVQQDCSLL DIANTSLMSD PPTVEKLKSE DEMNLRPLPT 180 HQPAQSVSMA PKVPSVTDDD MFNDGRVYEN FCVDDNDLTF ENYEELFGTP HVQTEQLFDD 240 AGIDSFFEMK EMPAADCDQQ LTPVQPECSN AVSADSGLCV PARQAISTIS LSFSGLAGES 300 NAGDHQDCGV SPLLLMGEQP WLPPGSEVSS AGGSRGSALS RYMEKKKRRK FDKKIRYASR 360 KARADVRKRV KGRFVKAGEA YDYDPLNDTR SY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 344 | 348 | KKKRR |
2 | 344 | 349 | KKKRRK |
3 | 345 | 349 | KKRRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK252666 | 0.0 | AK252666.1 Hordeum vulgare subsp. vulgare cDNA clone: FLbaf169b05, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020173272.1 | 0.0 | zinc finger protein CONSTANS-LIKE 10-like isoform X1 | ||||
Swissprot | Q9LUA9 | 1e-115 | COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10 | ||||
TrEMBL | A0A3B6QJL2 | 0.0 | A0A3B6QJL2_WHEAT; Uncharacterized protein | ||||
STRING | Traes_6DL_6FAD063EE.2 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 3e-91 | B-box type zinc finger protein with CCT domain |
Publications ? help Back to Top | |||
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